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Number of citations per year for the bioinformatics software tool GPL

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GPL specifications


Unique identifier OMICS_22873
Name GPL
Alternative name Graph Learning Package
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Files containing subgraph patterns, the frequencies of the enumerated subgraph patterns and the binary occurrence matrix of the obtained subgraph patterns (for gSpan); or subgraphs patterns and regression coefficients (for gPLS).
Output format TXT,DFS/PNG
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0_beta1
Stability Beta
Cmake, Eigen, Boost
Maintained Yes




No version available


  • person_outline Hiroto Saigo
  • person_outline Hiroto Saigo

Publication for Graph Learning Package

GPL citations


General guidelines for biomedical software development

PMCID: 5383938
PMID: 28443186
DOI: 10.5256/f1000research.11591.r21001

[…] ways retain the copyright notice.• Apache Public License 2.0 – This license is very permissive. It allows the licensed source code to be used in open-source and also in closed-source software.• GNU GPL – This license is restrictive. The users of the licensed system are free to use the licensed system without any usage restrictions; analyze it and use the results of the analysis (the source code […]


apex: phylogenetics with multiple genes

Mol Ecol Resour
PMCID: 5215480
PMID: 27417145
DOI: 10.1111/1755-0998.12567

[…] stalled in r by typing the following: install.packages(apex) The development version of apex is hosted on github: apex is distributed under GNU Public Licence (GPL) version 2 or greater. It is fully documented in a vignette accessible by typing the following: vignette(apex) […]


VMSbase: An R Package for VMS and Logbook Data Management and Analysis in Fisheries Ecology

PLoS One
PMCID: 4059747
PMID: 24932915
DOI: 10.1371/journal.pone.0100195

[…] rom the outset of the procedure the desired accessory information (i.e. bathymetry, space partitioning such as GSA or others, etc.). Obviously, VMSbase code is completely open and distributed under a GPL2-type license ( some of the VMSbase tools are at least partly original (namely the Interpolation and the Métier classification), the package relies o […]


The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome ome

PMCID: 3626512
PMID: 23587224
DOI: 10.1186/2047-217X-1-7

[…] and available at The project page can be found at biom-format is platform independent, and requires Python 2.6 or 2.7. It is available under GPL v3, and is free for all use. Version 1.0.0 of the biom-format project is available as Supplementary File 2, and available for download on the project page at: […]

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GPL institution(s)
Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Fukuoka, Japan; Division of System Cohort, Multi-Scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan; Institute for Advanced Study, Kyushu University, Fukuoka, Japan
GPL funding source(s)
Supported by the Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research (JSPS KAKENHI) (Grant No. 23700338, 25700029 and 15K14980), and the Program to Disseminate Tenure Tracking System, MEXT, Japan, and Kyushu University Interdisciplinary Programs in Education and Projects in Research Development.

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