Gpos-mPLoc protocols

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Gpos-mPLoc specifications

Information


Unique identifier OMICS_05422
Name Gpos-mPLoc
Alternative name Gpos-Ploc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen <>

Publication for Gpos-mPLoc

Gpos-mPLoc in pipelines

 (2)
2010
PMCID: 2891697
PMID: 20585611
DOI: 10.1371/journal.pcbi.1000824

[…] potential cleavage of this protein., according to the computational analysis, rv0178 has a transmembrane helix, as predicted by phobius, and is located in the extracellular compartment, according to gpos-ploc. previous studies suggest that the mycobacterial mce1 operon, which contains the gene encoding rv0178, plays an important role in mycobacterial invasion and persistent infection in mice, […]

2010
PMCID: 2891697
PMID: 20585611
DOI: 10.1371/journal.pcbi.1000824

[…] furthermore, proteins selected on the basis of the above mentioned criteria had to be predicted to be located on the cell surface by any of the general subcellular localization tools, especially gpos-ploc and psortb v. 2.0.4 (algorithms validated for prediction in mycobacterial proteins that have high sensitivity and specificity). additionally, candidate proteins had to contain at least one […]


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Gpos-mPLoc in publications

 (7)
PMCID: 5625738
PMID: 29062960
DOI: 10.1016/j.synbio.2016.10.003

[…] by ncbi (ftp://ftp.ncbi.nih.gov/pub/cog/cog2014/static/lists/liststrbin.html). cellular localizations of the proteins were determined using psortb version 3.0.2 (http://www.psort.org/psortb/), gpos-mploc (http://www.csbio.sjtu.edu.cn/bioinf/gpos-multi/#) and ngloc (http://genome.unmc.edu/ngloc/index.html) databases. theoretical pi and mw values of the proteins were calculated by using […]

PMCID: 4580317
PMID: 26398213
DOI: 10.1371/journal.pone.0138151

[…] secretion mechanisms, important secretory proteins, such as esat-6 and cfp-10, also contain no signal sequence in their n-termini. however, lipl was predicted to be an exported protein by the gpos-ploc (http://www.csbio.sjtu.edu.cn/bioinf/gpos-multi/), phobius (http://www.ebi.ac.uk/tools/pfa/phobius/), and psortb 3.0.2 (http://www.psort.org/psortb/index.html) tools [, ]. the result […]

PMCID: 2981880
PMID: 21067543
DOI: 10.1186/1745-7580-6-S2-S1

[…] bacterial proteins. another program is subloc [], a client/server suite which offers an interface for the prediction of prokaryotic subcellular location in three compartments. another still is gpos-ploc [], which fuses many basic classifiers, engineered using the optimized evidence-theoretic k-nearest neighbours rule. other programs include tatp 1.0 [], lipop 1.0 [], and phobius []. […]

PMCID: 2928729
PMID: 20865041
DOI: 10.1371/journal.pone.0012411

[…] the following resources: blastp searches of both the ncbi non-redundant and swissprot databases; modular analysis using hmmer 3.0 , cdd and interpro scan ; protein localization predictions using gpos-ploc ; and protein molecular weight predictions, made using the expasy proteomics server (http://ca.expasy.org/tools). transfer rnas were determined using trnascan-se . orthologues shared among […]

PMCID: 2891697
PMID: 20585611
DOI: 10.1371/journal.pcbi.1000824

[…] involved the use of the featured-based tools signalp 3.0 , tatp 1.0 , lipop 1.0 and secretomep 2.0 , while the general localization predictors pa-sub version 2.5 included in proteome analyst 3.0 , gpos-ploc and psortb version 2.0.4 were used for the second approach., the mycobacterial cell envelope has a complex architectural rearrangement with three well differentiated structures of unique […]


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Gpos-mPLoc institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China; Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China

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