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Protocols

Gpos-mPLoc specifications

Information


Unique identifier OMICS_05422
Name Gpos-mPLoc
Alternative name Gpos-Ploc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen

Publication for Gpos-mPLoc

Gpos-mPLoc citations

 (7)
library_books

Proteome wide alterations in an industrial clavulanic acid producing strain of Streptomyces clavuligerus

2016
PMCID: 5625738
PMID: 29062960
DOI: 10.1016/j.synbio.2016.10.003

[…] by ncbi (ftp://ftp.ncbi.nih.gov/pub/cog/cog2014/static/lists/liststrbin.html). cellular localizations of the proteins were determined using psortb version 3.0.2 (http://www.psort.org/psortb/), gpos-mploc (http://www.csbio.sjtu.edu.cn/bioinf/gpos-multi/#) and ngloc (http://genome.unmc.edu/ngloc/index.html) databases. theoretical pi and mw values of the proteins were calculated by using […]

library_books

Identification and Characterization of Lipase Activity and Immunogenicity of LipL from Mycobacterium tuberculosis

2015
PLoS One
PMCID: 4580317
PMID: 26398213
DOI: 10.1371/journal.pone.0138151

[…] secretion mechanisms, important secretory proteins, such as esat-6 and cfp-10, also contain no signal sequence in their n-termini. however, lipl was predicted to be an exported protein by the gpos-ploc (http://www.csbio.sjtu.edu.cn/bioinf/gpos-multi/), phobius (http://www.ebi.ac.uk/tools/pfa/phobius/), and psortb 3.0.2 (http://www.psort.org/psortb/index.html) tools [, ]. the result […]

library_books

Computer aided selection of candidate vaccine antigens

2010
Immunome Res
PMCID: 2981880
PMID: 21067543
DOI: 10.1186/1745-7580-6-S2-S1

[…] bacterial proteins. another program is subloc [], a client/server suite which offers an interface for the prediction of prokaryotic subcellular location in three compartments. another still is gpos-ploc [], which fuses many basic classifiers, engineered using the optimized evidence-theoretic k-nearest neighbours rule. other programs include tatp 1.0 [], lipop 1.0 [], and phobius []. […]

library_books

Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential

2010
PLoS One
PMCID: 2928729
PMID: 20865041
DOI: 10.1371/journal.pone.0012411

[…] the following resources: blastp searches of both the ncbi non-redundant and swissprot databases; modular analysis using hmmer 3.0 , cdd and interpro scan ; protein localization predictions using gpos-ploc ; and protein molecular weight predictions, made using the expasy proteomics server (http://ca.expasy.org/tools). transfer rnas were determined using trnascan-se . orthologues shared among […]

library_books

Computational Prediction and Experimental Assessment of Secreted/Surface Proteins from Mycobacterium tuberculosis H37Rv

2010
PLoS Comput Biol
PMCID: 2891697
PMID: 20585611
DOI: 10.1371/journal.pcbi.1000824

[…] involved the use of the featured-based tools signalp 3.0 , tatp 1.0 , lipop 1.0 and secretomep 2.0 , while the general localization predictors pa-sub version 2.5 included in proteome analyst 3.0 , gpos-ploc and psortb version 2.0.4 were used for the second approach., the mycobacterial cell envelope has a complex architectural rearrangement with three well differentiated structures of unique […]

library_books

Localization of proteins in the cell wall of Mycobacterium avium subsp. paratuberculosis K10 by proteomic analysis

2010
Proteome Sci
PMCID: 2859856
PMID: 20377898
DOI: 10.1186/1477-5956-8-21

[…] psortb in this study. the existing methods of subcellular localization have been developed for prokaryotic proteins mainly for bacterial proteins like psortb, pslpred, cello, loctree, p-classifier, gpos-ploc, gnbsl [,]. not any method could correctly predict all proteins location. one of the challenges in subcellular localization is to predict location of proteins having multiplelocation []. […]


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Gpos-mPLoc institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China; Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China

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