Protocols

GppFst specifications

Information


Unique identifier OMICS_14437
Name GppFst
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Version 0.0.1.0
Stability Beta
Maintained Yes

Download


download.png
github.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Todd Castoe

Publication for GppFst

GppFst citation

call_split

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

2017
Ecol Evol
PMCID: 5468163
PMID: 28616190
DOI: 10.1002/ece3.2996
call_split See protocol

[…] hed to determine whether statistical outlier loci had estimates of allelic differentiation that would not be expected under a model of neutral evolution. To test this, we designed a software program, GppFst (Adams et al., ; https://github.com/radamsRHA/GppFst), which conducts posterior predictive simulations (PPS) of F ST and dxy under a strict model of evolution in the absence of selection. To co […]

GppFst institution(s)
Department of Biology, The University of Texas at Arlington, Arlington, TX, USA; Department of Ecology, Evolution & Behavior, University of Minnesota, Saint Paul, MN, USA
GppFst funding source(s)
This work has been supported by a University of Texas at Arlington Phi Sigma Society Grant, and NSF DDIG grants (NSF DEB-1501886, NSF DEB-1501747).

GppFst reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GppFst