gprege statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Differential expression detection Data preprocessing Time course chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

gprege specifications

Information


Unique identifier OMICS_02011
Name gprege
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.24.0
Stability Stable
Requirements
R(>=2.10), gptk, spam
Maintained Yes

Versioning


Add your version

Documentation


Publication for gprege

gprege in publications

 (2)
PMCID: 5421758
PMID: 28481952
DOI: 10.1371/journal.pone.0177058

[…] differentially expressed genes in each simulated dataset. two of these methods, ttest & ranksum test, are widely used to analyse static gene expression data. the other two methods, geagp and gprege [], use gp to analyse temporal expression profiles. the main differences between geagp and gprege [] are the following: geagp directly estimates the mean functions of the gp from data, whereas […]

PMCID: 4718733
PMID: 26422514
DOI: 10.7554/eLife.08527.050

[…] these were: (i) starting from the replicate datasets, the gene expression time series of both the transcriptome and proteome were filtered to remove flat and/or noisy profiles using the r package gprege (). (ii) the gene product networks (i.e transcriptome or proteome) were generated, based on the gene profiles of the respective time course datasets, using the r package genenet (; ). […]


To access a full list of publications, you will need to upgrade to our premium service.

gprege institution(s)
The Sheffield Institute for Translational Neuroscience, Sheffield, UK

gprege reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review gprege