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GProX specifications

Information


Unique identifier OMICS_02506
Name GProX
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for GProX

GProX in publications

 (21)
PMCID: 5688136
PMID: 29142207
DOI: 10.1038/s41598-017-15936-y

[…] ontologies, biological processes and molecular function, were generated using go term classification software categorizer (v. 3.218)., for the clusters analyzed for consensus sequence homology, gprox was used to organize clusters with the following traits: no reference, no standard, 0.2 membership requirement, and threshold of −0.32–0.26 (equating to a 0.8–1.2-fold change minimum). […]

PMCID: 5578157
PMID: 28805727
DOI: 10.3390/ijms18081768

[…] the protein function/name was obtained via mascot software [] from swissprot database. gene ontology analysis was done in agbase [] for functional classification. a heat map plot was generated using gprox software to find the differential expression between treatments., all the data were subjected to one way anova followed by duncan’s multiple range tests at p ≤ 0.05, and an f-test was carried […]

PMCID: 5579122
PMID: 28879006
DOI: 10.1098/rsos.170641

[…] result in random pairwise hwis which are no longer comparable to the observed hwi. therefore, we suggest that to achieve comparable hwis, the distance within which individuals are grouped together (gprox) should be adjusted. this will, in most instances, result in a larger gprox than is used in the observed data because, in most instances, using the same distance will result in underestimating […]

PMCID: 5047655
PMID: 27624834
DOI: 10.1242/dev.135327

[…] growth interactions needed in the capsella fruit during the late phase differ for the proximal and distal regions. to distinguish the proximal region and the distal region we introduced two factors, gprox and gdist, which are distributed in opposing linear gradients in the valves (fig. s5). these factors only influence growth rates after 8 dai. clones near the base are elongated more along […]

PMCID: 4999887
PMID: 27561356
DOI: 10.1038/srep31795

[…] genes were calculated using the 2-δδct method. three replicates were carried out for each gene using different sets of oocytes. the primer sequences used for the qrt-pcr analysis were showed in ., gprox was used for hierarchical clustering analysis. gene ontology and kegg pathway were analyzed using the david software 6.7 (http://david.abcc.ncifcrf.gov/). spss 17.0 was applied to evaluate […]


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GProX institution(s)
Center for Experimental BioInformatics (CEBI), Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark

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