GPS-PUP specifications

Information


Unique identifier OMICS_06902
Name GPS-PUP
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Jian Ren <>
  • person_outline Yu Xue <>
  • person_outline Zexian Liu <>

Additional information


http://pup.biocuckoo.org/faq.php

Information


Unique identifier OMICS_06902
Name GPS-PUP
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Requirements
JRE
Maintained Yes

Documentation


Maintainers


  • person_outline Jian Ren <>
  • person_outline Yu Xue <>
  • person_outline Zexian Liu <>

Additional information


http://pup.biocuckoo.org/faq.php

Publication for GPS-PUP

GPS-PUP in publications

 (3)
PMCID: 5108770
PMID: 27895634
DOI: 10.3389/fmicb.2016.01816

[…] luciferase, pebp and polyketidecyclase/dehydrase domain) of these hypothetical proteins and over expression of these proteins might neutralize/modulate the effect of drug molecules. tbpred and gps-pup predicted cytoplasmic nature and potential pupylation sites within these identified proteins, respectively. string analysis also suggested that over expressed proteins along […]

PMCID: 4593609
PMID: 26436944
DOI: 10.1371/journal.pone.0139414

[…] among these rv2005c, rv2744c and rv0148 are proteins with unknown functions. docking showed that both drugs bind to the conserved domain (usp, pspa and sdr domain) of these hypothetical proteins and gps-pup predicted potential pupylation sites within them. increased intensities of these proteins and proteasome subunit alpha might not only be neutralized/modulated the drug molecules but also […]

PMCID: 3770009
PMID: 24066285
DOI: 10.1155/2013/109549

[…] data sets. in this regard, the computation approaches which could effectively and accurately predict the pupylation sites is urgently needed. liu et al. had constructed the first online predictor, gps-pup, for the prediction of the pupylation sites []. in their method, 127 experimentally identified pupylation sites in 109 prokaryotic proteins had been utilized as the training dataset, […]

GPS-PUP institution(s)
Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, China; Hubei Bioinformatics and Molecular Imaging Key Laboratory, Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong, China
GPS-PUP funding source(s)
Supported by grants from the National Basic Research Program (973 project) (2010CB945400, 2011CB910400, 2011CB711000), National Natural Science Foundation of China (90919001, 31071154, 30900835, 30830036, 91019020, 21075045), and Fundamental Research Funds for the Central Universities (HUST: 2010JC049, 2010ZD018; SYSU: 11lgzd11, 11lgjc09; USTC: WK2340000032).

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