GPS-SUMO protocols

View GPS-SUMO computational protocol

GPS-SUMO statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left SUMOylation site prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

GPS-SUMO specifications

Information


Unique identifier OMICS_04097
Name GPS-SUMO
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Output data A table containing the information of FASTA title, modified position, modified peptide, predicted score, prediction cutoff and modified type.
Programming languages Javascript, PHP
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Jian Ren <>
  • person_outline Yu Xue <>

Additional information


http://sumosp.biocuckoo.org/userguide.php

Information


Unique identifier OMICS_04097
Name GPS-SUMO
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.0.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Jian Ren <>
  • person_outline Yu Xue <>

Additional information


http://sumosp.biocuckoo.org/userguide.php

Publications for GPS-SUMO

GPS-SUMO in pipelines

 (2)
2017
PMCID: 5522101
PMID: 28473666
DOI: 10.18632/oncotarget.17449

[…] (http://lipid.biocuckoo.org/webserver.php), s-nitrosylation using gps-sno (http://sno.biocuckoo.org/online.php), plamitoylation using css-palm (http://nbapalm.biocuckoo.org/), sumoylation using gps-sumo (http://sumosp.biocuckoo.org/online.php), and phosphorylation using gps (http://gps.biocuckoo.org/) for qualitative and quantitative analysis., the acyl-biotin exchange assay was conducted […]

2014
PMCID: 4204854
PMID: 25333472
DOI: 10.1371/journal.pone.0110232

[…] tools have been developed for ptm analysis . the algorithms used in this field include igps 1.0, which is used to predict phosphorylation , css-palm 4.0, which is used to predict s-palmitoylation , gps-sumo 1.0, which is used to predict sumoylation , and gps-yno2, which is used to predict protein nitration . moreover, several programs and algorithms have been developed to predict cysteine […]


To access a full list of citations, you will need to upgrade to our premium service.

GPS-SUMO in publications

 (24)
PMCID: 5852961
PMID: 29540677
DOI: 10.1038/s41389-018-0038-6

[…] activity. to this end, we first screened for putative sumoylation sites in the foxk2 sequence, using a web-based prediction tool (http://sumosp.biocuckoo.org/online.php). based on analysis with gps-sumo, two consensus sumoylation motifs (aa positions: 527 and 633) were identified within the foxk2 sequence that show high scores and statistically significant p values (fig. ). to establish […]

PMCID: 5825156
PMID: 29474435
DOI: 10.1371/journal.pone.0193528

[…] within the unstructured n-terminal region () revealed that the lysine residue in position 27 (k27) could be the branching site, being predicted to be sumoylated by different bioinformatic tools (gps-sumo [], jassa [], sumoamvr [], pci-sumo []). to establish the importance of k27 in the formation of poly-sumo chains, this residue was changed to arginine (k27r), which preserves the charge […]

PMCID: 5930406
PMID: 29438996
DOI: 10.1074/mcp.RA117.000014

[…] in the e3 ligase reactions under 1× e1/e2 condition, we revealed the e3 ligase-dependent targets. the known sumoylation consensus motif occurred in 27.27–54.61% (m3 algorithm) or 20.2–56.62% (gps-sumo) () (depending on the e3 ligase) of the proteins modified in our assays () (data set 2). we also observed that pias e3 ligase reactions targeted substrates with proportionally higher numbers […]

PMCID: 5799398
PMID: 28057906
DOI: 10.4142/jvs.2018.19.1.35

[…] (ptm), viz., phosphorylation, glycosylation, and sumoylation were predicted by using the netphos 2.0 [], netoglyc 4.0 [], netnglyc 1.0 (center for biological sequence analysis, usa), and gps-sumo 2.0 [] servers, respectively, on the expasy portal. the threshold/cut-off values for each prediction were set as described previously []., nucleotide and amino acid sequences were aligned […]

PMCID: 5774762
PMID: 29351565
DOI: 10.1371/journal.pone.0191391

[…] between the ud domains of sculp1 and kmulp1 (). one striking difference was the presence of a predicted sim motif in the ud domain of kmulp1 (vdild) that is not found in the ud domain of sculp1 (gps-sumo []). this kmsim-specific motif is not part of a previously described sumo-binding surface of sculp1 () []. we mapped the putative kmsim onto the surface of the published co-crystal structure […]


To access a full list of publications, you will need to upgrade to our premium service.

GPS-SUMO institution(s)
State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou, China; Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
GPS-SUMO funding source(s)
Supported by National Basic Research Program (973 project) [2013CB933902, 2012CB911201, 2012CB910101]; National Natural Science Foundation of China [31171263, 81272578]; Guangdong Natural Science Funds for Distinguished Young Scholar [S20120011335]; Zhujiang Nova Program of Guangzhou [2011J2200042]; International Science & Technology Cooperation Program of China [2014DFB30020].

GPS-SUMO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GPS-SUMO