GPS-SUMO statistics

info info

Citations per year

info

Popular tool citations

chevron_left SUMOylation site prediction chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

Protocols

GPS-SUMO specifications

Information


Unique identifier OMICS_04097
Name GPS-SUMO
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Output data A table containing the information of FASTA title, modified position, modified peptide, predicted score, prediction cutoff and modified type.
Programming languages Javascript, PHP
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Jian Ren
  • person_outline Yu Xue

Additional information


http://sumosp.biocuckoo.org/userguide.php

Information


Unique identifier OMICS_04097
Name GPS-SUMO
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A primary sequence or multiple proteins sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.0.1
Stability Stable
Maintained Yes

Download


download.png
download.png
download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Jian Ren
  • person_outline Yu Xue

Additional information


http://sumosp.biocuckoo.org/userguide.php

Publications for GPS-SUMO

GPS-SUMO citations

 (25)
library_books

SUMOylation modulates FOXK2 mediated paclitaxel sensitivity in breast cancer cells

2018
Oncogenesis
PMCID: 5852961
PMID: 29540677
DOI: 10.1038/s41389-018-0038-6

[…] activity. to this end, we first screened for putative sumoylation sites in the foxk2 sequence, using a web-based prediction tool (http://sumosp.biocuckoo.org/online.php). based on analysis with gps-sumo, two consensus sumoylation motifs (aa positions: 527 and 633) were identified within the foxk2 sequence that show high scores and statistically significant p values (fig. ). to establish […]

library_books

SUMO polymeric chains are involved in nuclear foci formation and chromatin organization in Trypanosoma brucei procyclic forms

2018
PLoS One
PMCID: 5825156
PMID: 29474435
DOI: 10.1371/journal.pone.0193528

[…] within the unstructured n-terminal region () revealed that the lysine residue in position 27 (k27) could be the branching site, being predicted to be sumoylated by different bioinformatic tools (gps-sumo [], jassa [], sumoamvr [], pci-sumo []). to establish the importance of k27 in the formation of poly-sumo chains, this residue was changed to arginine (k27r), which preserves the charge […]

library_books

Global Identification of Small Ubiquitin related Modifier (SUMO) Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration *

2018
PMCID: 5930406
PMID: 29438996
DOI: 10.1074/mcp.RA117.000014

[…] in the e3 ligase reactions under 1× e1/e2 condition, we revealed the e3 ligase-dependent targets. the known sumoylation consensus motif occurred in 27.27–54.61% (m3 algorithm) or 20.2–56.62% (gps-sumo) () (depending on the e3 ligase) of the proteins modified in our assays () (data set 2). we also observed that pias e3 ligase reactions targeted substrates with proportionally higher numbers […]

library_books

Analysis of structure function relationship in porcine rotavirus A enterotoxin gene

2018
PMCID: 5799398
PMID: 28057906
DOI: 10.4142/jvs.2018.19.1.35

[…] (ptm), viz., phosphorylation, glycosylation, and sumoylation were predicted by using the netphos 2.0 [], netoglyc 4.0 [], netnglyc 1.0 (center for biological sequence analysis, usa), and gps-sumo 2.0 [] servers, respectively, on the expasy portal. the threshold/cut-off values for each prediction were set as described previously []., nucleotide and amino acid sequences were aligned […]

library_books

SUMO targeting of a stress tolerant Ulp1 SUMO protease

2018
PLoS One
PMCID: 5774762
PMID: 29351565
DOI: 10.1371/journal.pone.0191391

[…] between the ud domains of sculp1 and kmulp1 (). one striking difference was the presence of a predicted sim motif in the ud domain of kmulp1 (vdild) that is not found in the ud domain of sculp1 (gps-sumo []). this kmsim-specific motif is not part of a previously described sumo-binding surface of sculp1 () []. we mapped the putative kmsim onto the surface of the published co-crystal structure […]

library_books

Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci

2017
Front Plant Sci
PMCID: 5714883
PMID: 29250092
DOI: 10.3389/fpls.2017.02043

[…] the interaction was scored positive when yeast growth was seen for at least two replicates., not a true tf but present in the regia collection., a commonly used tool to predict sas and sim motifs is gps-sumo (ren et al., ; zhao et al., ). we used it to predict these motifs in our set of sce1 interactors. of the proteins that interacted with sce1, 79% contained at least one sas, with an average […]


Want to access the full list of citations?
GPS-SUMO institution(s)
State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou, China; Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
GPS-SUMO funding source(s)
Supported by National Basic Research Program (973 project) [2013CB933902, 2012CB911201, 2012CB910101]; National Natural Science Foundation of China [31171263, 81272578]; Guangdong Natural Science Funds for Distinguished Young Scholar [S20120011335]; Zhujiang Nova Program of Guangzhou [2011J2200042]; International Science & Technology Cooperation Program of China [2014DFB30020].

GPS-SUMO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GPS-SUMO