GPSeq statistics

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Associated diseases

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GPSeq specifications

Information


Unique identifier OMICS_01333
Name GPSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained Yes

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Publication for GPSeq

GPSeq in publications

 (2)
PMCID: 5948225
PMID: 29766023
DOI: 10.1016/j.omtm.2018.02.002

[…] exploited this methodology to profile all heterogeneic populations of self-complementary aav genomes via bioinformatics pipelines and have coined this approach aav-genome population sequencing (aav-gpseq). the approach can reveal the relative distribution of truncated genomes versus full-length genomes in vector preparations. preparations that seemingly show high genome homogeneity by gel […]

PMCID: 3775431
PMID: 24062766
DOI: 10.3389/fgene.2013.00178

[…] however, due to extra sources of variation, the observed dispersion is larger than the expected for a simple poisson distribution and to correctly account for over-dispersion, generalized poisson (gpseq) (srivastava and chen, ), mixed poisson (tspm) (auer and doerge, ), poisson log-linear (poissonseq) (li et al., ) and negative binomial (edger, deseq, bayseq, nbpseq) (anders and huber, ; […]


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GPSeq institution(s)
Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA

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