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GPstuff specifications


Unique identifier OMICS_27879
Name GPstuff
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C, MATLAB
License GNU General Public License version 3.0
Computer skills Advanced
Version 4.7
Stability Stable
Maintained No




No version available


This tool is not available anymore.

Additional information

Publication for GPstuff

GPstuff citations


SLUG transcription factor: a pro survival and prognostic factor in gastrointestinal stromal tumour

Br J Cancer
PMCID: 5418455
PMID: 28334729
DOI: 10.1038/bjc.2017.82

[…] ceded recurrence, censoring the patients alive on the date of last follow-up. The P values are two-sided. The statistical calculations were done using the IBM SPSS Statistics package v. 22.0, or with GPstuff 4.6 (). […]


Impact of tumour RAS/BRAF status in a first line study of panitumumab + FOLFIRI in patients with metastatic colorectal cancer

Br J Cancer
PMCID: 5104899
PMID: 27764839
DOI: 10.1038/bjc.2016.343

[…] covariate. Decision curves were used to estimate the PFS hazard ratio (HR) with increasing levels of baseline AREG expression. A Gaussian Process (GP) model was used to fit the PH model () using the GPstuff toolkit in MATLAB () – details are included in the . […]


The effectiveness of physical activity monitoring and distance counseling in an occupational setting – Results from a randomized controlled trial (CoAct)

BMC Public Health
PMCID: 3507818
PMID: 22578104
DOI: 10.1186/1471-2458-12-344

[…] y including them as a covariate in the model. We also included a random effect component to model person-specific levels for SA days. The hurdle negative binomial model was implemented using MATLAB’s GPstuff toolbox [].We also performed an exploratory subgroup analysis to detect possible effect modifiers and mediators. The effect modifiers were personal characteristics (age and gender), self-rated […]


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GPstuff institution(s)
Department of Environmental Sciences, University of Helsinki, Helsinki, Finland; Helsinki Institute for Information Technology HIIT, Department of Computuer Science Aalto University School of Science, Aalto, Finland
GPstuff funding source(s)
Supported by the Academy of Finland (grant 218248), Finnish Funding Agency for Technology and Innovation (TEKES), and the Graduate School in Electronics and Telecommunications and Automation (GETA), and the Finnish Foundation for Economic and Technology Sciences KAUTE, Finnish Cultural Foundation, and Emil Aaltonen Foundation.

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