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gpu_deconvolution specifications

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Unique identifier OMICS_10431
Name gpu_deconvolution
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Parallelization CUDA
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Jan Huisken

Publication for gpu_deconvolution

gpu_deconvolution citation

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Automatic and adaptive heterogeneous refractive index compensation for light sheet microscopy

2017
Nat Commun
PMCID: 5606987
PMID: 28931809
DOI: 10.1038/s41467-017-00514-7

[…] on code provided by bruce and butte, to deconvolve images on a custom workstation with two nvidia titan cards. we found that hilo reconstruction requires roughly ×2 longer computational time, but gpu deconvolution did not for background from scattering as well as hilo reconstruction. for cpu-based deconvolution, we evaluated multiple freely available and commercial solutions (svi, autoquant). […]


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gpu_deconvolution institution(s)
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany

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