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GPViz | Dynamic visualization of genomic regions and variants affecting protein domains

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A versatile Java-based software for dynamic gene-centered visualization of genomic regions and/or variants. User-defined data can be loaded in common formats as resulting from analysis workflows used in sequencing applications and studied in the context of the gene, the corresponding transcript isoforms, proteins and their domains or other protein features. Both the genomic regions and variants can be also defined interactively. Various gene filter options are provided to enable an intersection of variants, genomic regions and affected protein features.

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GPViz forum

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GPViz classification

GPViz specifications

Unique identifier:
OMICS_00915
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
1.2.8
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable

GPViz distribution

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GPViz forum

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Participate in the forum to get support for using tools. Ask questions about technical specifications.
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No open topic.

GPViz classification

GPViz specifications

Unique identifier:
OMICS_00915
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Programming languages:
Java
Version:
1.2.8
Maintained:
Yes

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Publications

Institution(s)

Biocenter, Division of Bioinformatics, Innsbruck Medical University and Oncotyrol Center for Personalized Cancer Medicine GmbH, Innsbruck, Austria

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