GrapeTree specifications


Unique identifier OMICS_23751
Name GrapeTree
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output format JSON,NWK,SVD
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Javascript, Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.5.0
Stability Stable
Requirements click, decorator, DendroPy, Flask, itsdangerous, Jinja2, MarkupSafe, networkx, numpy, psutil, Werkzeug
Maintained Yes



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  • person_outline Zhemin Zhou <>
  • person_outline Martin Sergeant <>

Additional information

Publication for GrapeTree

GrapeTree institution(s)
Warwick Medical School, University of Warwick, Coventry, UK; Instituto de Engenharia de Sistemas e Computadores: Investigação e Desenvolvimento (INESC-ID), Lisboa, Portugal; Universidade de Lisboa, Faculdade de Medicina, Instituto de Microbiologia and Instituto de Medicina Molecular, Lisboa, Portugal; Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal; ADEETC, Instituto Superior de Engenharia de Lisboa, Instituto Politécnico de Lisboa, Lisboa, Portugal
GrapeTree funding source(s)
Supported by grant from the Wellcome Trust (202792/Z/16/Z) and (BBSRC BB/L020319/1) for the EnteroBase project.

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