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GraphIBD | Pairwise IBD association testing in genome-wide association studies

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A free, open-source IBD association testing software for genome-wide association study analysis. GraphIBD requires an IBD detection method such as Beagle FastIBD to run first. Then GraphIBD builds upon the IBD information to test if the IBD segments show association to the traits. This can be a powerful strategy to detect rare variant associations.

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GraphIBD forum

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GraphIBD classification

GraphIBD specifications

Unique identifier:
OMICS_02183
Interface:
Command line interface
Operating system:
Unix/Linux
Version:
0.1.0
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable

GraphIBD distribution

versioning

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No versioning.

GraphIBD support

Maintainer

  • Buhm Han <>

Credits

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Publications

Institution(s)

Division of Genetics, Brigham and Women's Hospital and Division of Rheumatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA; Partners Center for Personalized Genetic Medicine, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA; Computer Science Department, University of California, Los Angeles, CA, USA; Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK; Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht, Netherlands; Department of Medical Genetics, University Medical Center Utrecht, Utrecht, Netherlands; Department of Human Genetics, University of California, Los Angeles, CA, USA

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