Graphkernels statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Graphkernels

Tool usage distribution map

This map represents all the scientific publications referring to Graphkernels per scientific context
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Graphkernels specifications


Unique identifier OMICS_21767
Name Graphkernels
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.6
Stability Stable
igraph(≥1.1.2), Rcpp(≥0.12.9)
Maintained Yes




No version available



  • person_outline Mahito Sugiyama
  • person_outline Elisabetta Ghisu

Additional information

Publication for Graphkernels

Graphkernels citation


graphkernels: R and Python packages for graph comparison

PMCID: 5860361
PMID: 29028902
DOI: 10.1093/bioinformatics/btx602
call_split See protocol

[…] Each function implemented in the graphkernels packages receives a collection of graphs G1, G2, …, Gn and returns the kernel (Gram) matrix (Kij)∈ℝn×n with the respective graph kernel, where each kernel value Kij shows the similarity b […]

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Graphkernels institution(s)
National Institute of Informatics, Tokyo, Japan; JST PRESTO, Saitama, Japan; D-BSSE, ETH Zürich, Basel, Switzerland; Swiss Institute of Bioinformatics, Basel, Switzerland.
Graphkernels funding source(s)
Supported by JSPS KAKENHI Grant Numbers JP16K16115 and JP16H02870.

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