Graphkernels specifications

Information


Unique identifier OMICS_21767
Name Graphkernels
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.6
Stability Stable
Requirements
igraph(≥1.1.2), Rcpp(≥0.12.9)
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Mahito Sugiyama
  • person_outline Elisabetta Ghisu

Additional information


https://pypi.python.org/pypi/graphkernels

Publication for Graphkernels

Graphkernels citation

call_split

graphkernels: R and Python packages for graph comparison

2017
Bioinformatics
PMCID: 5860361
PMID: 29028902
DOI: 10.1093/bioinformatics/btx602
call_split See protocol

[…] Each function implemented in the graphkernels packages receives a collection of graphs G1, G2, …, Gn and returns the kernel (Gram) matrix (Kij)∈ℝn×n with the respective graph kernel, where each kernel value Kij shows the similarity b […]

Graphkernels institution(s)
National Institute of Informatics, Tokyo, Japan; JST PRESTO, Saitama, Japan; D-BSSE, ETH Zürich, Basel, Switzerland; Swiss Institute of Bioinformatics, Basel, Switzerland.
Graphkernels funding source(s)
Supported by JSPS KAKENHI Grant Numbers JP16K16115 and JP16H02870.

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