Graphle specifications

Information


Unique identifier OMICS_08969
Name Graphle
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability No
Maintained No

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Versioning


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Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_08969
Name Graphle
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Maintainer


This tool is not available anymore.

Publication for Graphle

Graphle in publications

 (4)
PMCID: 3459891
PMID: 23028291
DOI: 10.1371/journal.pcbi.1002694

[…] to allow dynamic visualization and cross-network comparison of our integration results, we developed the mousemap software (http://mousemap.princeton.edu), based on the open-source viewing framework graphle that we developed in . mousemap is based on the prefuse java visualization library, the args4j command line parsing tool, and the sqlitejdbc sqlite database driver. the basic functionality […]

PMCID: 3447684
PMID: 22897913
DOI: 10.1186/1471-2105-13-204

[…] []., because visualization naturally enables gene network analysis, many visualization tools have been developed to explore biological networks including cytoscape [], osprey [], visant [], and graphle []. although many tools exist, the state-of-the-art tools in biological network analysis do not support the exploration of dynamic networks [,]. while information visualization researchers […]

PMCID: 3342218
PMID: 22448851
DOI: 10.1186/1756-0381-5-2

[…] methods for laying out networks. such software packages, each providing a specific range of visualization options, include, e.g., visant, navigator, patika, pina, matisse, graphviz, osprey, graphle, celldesigner, biolayout, proviz and pajek; see [,,] and references therein. among others, cytoscape software platform for network analysis and visualization has been widely adopted […]

PMCID: 2880427
PMID: 20078854
DOI: 10.1186/bcr2472

[…] biological interactions among the genes identified we used the database for annotation, visualization and integrated discovery (david) [], human experimental/functional mapper (hefalmp) [] and graphle []. david is a functional annotation tool able to extract biological information out of a large list of genes, while graphle is an interactive tool displaying relationships between genes […]


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Graphle institution(s)
Department of Computer Science, Princeton University, Princeton, NJ, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA

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