GraphMap specifications

Information


Unique identifier OMICS_16089
Name GraphMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA/FASTQ
Biological technology Oxford Nanopore
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Version 0.4.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Niranjan Nagarajan <>

GraphMap article

GraphMap citation

2016
PMCID: 5408847

[…] of their algorithms. we ran mhap with a list of k-mer counts derived from jellyfish (marçais and kingsford, 2011) for each value of k tested to help filter repetitive k-mers. unfortunately, graphmap could not be parameterized when running in the ‘owler’ mode, and had only one set of running parameters. in this regard, our results for graphmap may not be impartial; […]

GraphMap funding source(s)
Supported by the IMaGIN platform (project no. 102 101 0025), through a grant from the Science and Engineering Research Council, funding to the Genome Institute of Singapore from the Agency for Science, Technology and Research (A*STAR), Singapore, and funding from the Croatian Science Foundation (Project no. 7353—Algorithms for Genome Sequence Analysis).

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