GraphWeb specifications

Information


Unique identifier OMICS_16580
Name GraphWeb
Interface Web user interface
Restrictions to use None
Input data A combined biological network of a selected species, consisting of genes, proteins or microarray probesets as nodes and corresponding associations as edges.
Output data A table containing one row for each graph module found, with the following columns containing links to results: node name conversion, number of nodes, list nodes, list edges, zoom in, label distribution, score, g:Profiler annotations, visualisations.
Programming languages C++, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Jaak Vilo <>

Publication for GraphWeb

GraphWeb institution(s)
University of Tartu, Institute of Computer Science, Tartu, Estonia; EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; University of Tartu, Institute of Molecular and Cell Biology, Tartu, Estonia; QureTec Ltd. Ulikooli, Tartu, Estonia
GraphWeb funding source(s)
This work has been supported by the EU FP6 grants ENFIN LSHG-CT-2005-518254 and COBRED LSHB-CT-2007-037730, Estonian Science Foundation grant ETF7437, and funding from the Marie Curie Biostar program and the Tiger University program of the Estonian Information Technology Foundation.

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