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GRASSIUS specifications

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Unique identifier OMICS_00555
Name GRASSIUS
Alternative name Grass Regulatory Information Server
Restrictions to use None
Maintained Yes

Publication for Grass Regulatory Information Server

GRASSIUS citations

 (9)
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Comparative Histological and Transcriptional Analysis of Maize Kernels Infected with Aspergillus flavus and Fusarium verticillioides

2017
Front Plant Sci
PMCID: 5723656
PMID: 29270183
DOI: 10.3389/fpls.2017.02075
call_split See protocol

[…] MapMan (). Then we used the MaizeSequence database to obtain gene annotation (). For the genes without annotation in MaizeSequence database, we combined a few databases, including MaizeGDB, ProFITS, GRASSIUS, CoGePedia, Maize Protein Atlas databases (; ; ; ; ) and the R-like gene database published by . Differentially expressed maize genes were also placed into biosynthetic and regulatory pathway […]

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Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico

2017
BMC Genomics
PMCID: 5591509
PMID: 28886704
DOI: 10.1186/s12864-017-4005-y

[…] & Additional file ). For ‘hub’ genes lacking descriptions we searched the literature for their putative functions. Finally, maize transcription factor information was collected from GrassTFDB on the Grass Regulatory Information Server GRASSIUS [, ]. […]

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Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome Wide Annotation and Global Transcriptomic Analysis

2017
Genome Biol Evol
PMCID: 5737478
PMID: 28922793
DOI: 10.1093/gbe/evx161

[…] To further validate the pineapple TFs and TCs identified in this study, we searched for their best homologs using blastp in the public plant TF and TC databases—PlnTFDB (), PlantTFDB 3.0 (), Grassius (), ProFITS (http://bioinfo.cau.edu.cn/ProFITS/index.php; last accessed August 30, 2017), and iTAK (http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi; last accessed August 30, 2017). Appr […]

library_books

Evidence for maternal control of seed size in maize from phenotypic and transcriptional analysis

2016
J Exp Bot
PMCID: 4783370
PMID: 26826570
DOI: 10.1093/jxb/erw006

[…] ≤0.05 and |log2 fold change| ≥1. A heatmap with dendrograms was produced with the pheatmap R package (). Annotation of transcriptional factor family members was based on information from GrassTFDB of GRASSIUS (; ). Gene Ontology (GO) enrichment analyses of the DEGs and weighted gene co-expression network analysis (WGCNA)-generated co-expression modules were performed with the goseq package in R us […]

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Systematic Analysis and Identification of Stress Responsive Genes of the NAC Gene Family in Brachypodium distachyon

2015
PLoS One
PMCID: 4376915
PMID: 25815771
DOI: 10.1371/journal.pone.0122027
call_split See protocol

[…] n-redundant sequences were manually checked for the NAM domain and compared with the NAC family in the transcription factor database PlantTFDB (http://planttfdb.cbi.pku.edu.cn/) and GrassTFDB (http://grassius.org/grasstfdb.html). Other conserved domains in addition to NAM domain were also identified in the Pfam database. Transmembrane motifs in the sequences were identified with TMHMM Server v.2.0 […]

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Correlation between a loss of auxin signaling and a loss of proliferation in maize antipodal cells

2015
Front Plant Sci
PMCID: 4374392
PMID: 25859254
DOI: 10.3389/fpls.2015.00187
call_split See protocol

[…] an outgroup for the AUX1 family of auxin influx carriers. Maize ARF transcription factor nomenclature is based on published results (Xing et al., ) and the Grass Transcription Factor Database (http://grassius.org/tf_browsefamily.html?species=Maize) (Yilmaz et al., ). Only ARF genes with a full-length B3 domain were included in the analysis. The list of maize IAA genes was taken from the annotated […]


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GRASSIUS institution(s)
Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, OH, USA

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