GRAVY Calculator specifications

Information


Unique identifier OMICS_13605
Name GRAVY Calculator
Interface Web user interface
Restrictions to use None
Input data Protein sequence(s)
Input format FASTA
Output data Results could be clearly arranged in single sections; Results could be arranged in a table. This is recommended for multi-sequence queries; Separator-delimited result view for data export.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline GRAVY Calculator Team <>

GRAVY Calculator in publications

 (20)
PMCID: 5852485
PMID: 29439417
DOI: 10.3390/md16020057

[…] for the improvement of the manuscript. , the authors declare that there is no conflict of interests., nn: no data; a pi and gravy were calculated by http://web.expasy.org/protparam/ and http://www.gravy-calculator.de/; b data not published in our work., nn: no data; a mic: μg/ml; trinary tract infection (uti); b ic50: μm; c zebrafish model; d ic50: μg/ml; e embryos challenged with aeromonas […]

PMCID: 5647562
PMID: 28910098
DOI: 10.1021/acs.analchem.7b01937

[…] using normalized spectral abundance factor (nsaf) reported by peptideshaker. protein sequences were obtained from the uniprotkb web site (www.uniprot.org), and gravy indexes were obtained using the gravy calculator (http://www.gravy-calculator.de)., the peptide mixtures obtained from proteolysis of protein extracts of tissues are complex samples, and interaction between different compounds […]

PMCID: 5601298
PMID: 28664598
DOI: 10.1002/pmic.201700052

[…] peptides were not imported. all information (including areas, score, fdr, observed retention time) was exported in .xlsx format for results analysis., gravy scores were determined using http://www.gravy-calculator.de/, and pi and molecular weight using http://web.expasy.org/compute_pi/. the swath acquisition replicates template was used to evaluate the reproducibility of the transitions based […]

PMCID: 5541829
PMID: 28824675
DOI: 10.3389/fpls.2017.01339

[…] using the protscale program at http://www.expasy.ch/tools/protscale.html. the value g in each graph is the grand average of hydropathy (gravy) for each protein and was calculated using the gravy calculator program at http://www.gravy-calculator.de/., multiple-sequence alignments of oleosin amino acid sequence were performed using the clustalw algorithm of geneious 9.0 (kearse et al., ) […]

PMCID: 5539426
PMID: 28765221
DOI: 10.1128/mBio.00909-17

[…] for ompa and dsba, the h-region for each variant was defined using phobius () (http://phobius.sbc.su.se/). hydrophobicity was scored using the grand average of hydropathy (gravy) value at http://www.gravy-calculator.de/. wt, wild type. bold letter k in sequences indicates inserted lysine residue., when we examined growth on sds semiquantitatively by monitoring growth curves (), it could be seen […]


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