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GREAM specifications

Information


Unique identifier OMICS_12264
Name GREAM
Alternative name Genomic Repeat Element Analyzer for Mammals
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Source code URL http://resource.ibab.ac.in/cgi-bin/GREAM/stat.pl
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Versioning


No version available

Maintainer


  • person_outline Kshitish K. Acharya <>

Information


Unique identifier OMICS_12264
Name GREAM
Alternative name Genomic Repeat Element Analyzer for Mammals
Interface Web user interface
Restrictions to use None
Input data Species, Gene identifier, Gene-list, Neighborhood region, Repeat class, Statistics
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Kshitish K. Acharya <>

Publication for Genomic Repeat Element Analyzer for Mammals

GREAM citations

 (2)
library_books

Prioritizing single nucleotide polymorphisms and variants associated with clinical mastitis

2017
PMCID: 5473491
PMID: 28652783
DOI: 10.2147/AABC.S123604

[…] associated with genetic variation. in discriminating these candidates, we are then able to identify causative snps that could possibly explain their role in phenotypic associations. the “genomic repeat element analyzer for mammals” validates how many genes form a part of the repeat elements and family members, and whether they are conserved or specific to these organisms. however, […]

library_books

Effects of Polyphenols on Oxidative Stress Mediated Injury in Cardiomyocytes

2017
PMCID: 5452253
PMID: 28531112
DOI: 10.3390/nu9050523

[…] is essential for the universal and definite acceptance of the clinical usefulness of polyphenols in cardiovascular disease., this study was supported by a grant from italian ministry of defence, (gream project). rosanna mattera is a recipient of the sapienza phd program in molecular medicine., all authors of this paper have directly participated in the planning or drafting of this manuscript […]


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GREAM institution(s)
Institute of Bioinformatics and Applied Biotechnology, Biotech Park, Electronic City, Bengaluru, Karnataka state, India; Manipal University, Manipal, Karnataka state, India; Shodhaka Life Sciences Pvt. Ltd., IBAB, Biotech Park, Bengaluru, Karnataka state, India
GREAM funding source(s)
This work was supported by an institutional grant to Institute of Bioinformatics and Biotechnology from Department of Electronics and Information Technology, Government of India, under ‘Centre of Excellence for Research and Teaching in Bioinformatics'.

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