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GREAT

Predicts functions of cis-regulatory regions. Many coding genes are well annotated with their biological functions. Non-coding regions typically lack such annotation. GREAT assigns biological meaning to a set of non-coding genomic regions by analyzing the annotations of the nearby genes. Thus, it is particularly useful in studying cis functions of sets of non-coding genomic regions. Cis-regulatory regions can be identified via both experimental methods (e.g. ChIP-seq) and by computational methods (e.g. comparative genomics).

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GREAT classification

GREAT specifications

Interface:
Web user interface
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Version:
3.0
Maintained:
Yes

GREAT support

Maintainer

  • Michael Hiller <>

Credits

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Publications

Institution(s)

Department of Developmental Biology, Stanford University, Stanford, CA, USA, Department of Computer Science, Stanford University, Stanford, CA, USA and Department of Electrical Engineering, Stanford University, Stanford, CA, USA

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