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GREIN specifications


Unique identifier OMICS_29371
Alternative name GEO RNA-seq Experiments Interactive Navigator
Interface Web user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, R
License GNU General Public License version 2.0
Computer skills Basic
Version 1.0.0
First release date 2018
Stability Stable
Maintained Yes
Availability Yes


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus





Publication for GEO RNA-seq Experiments Interactive Navigator

GREIN citations


Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens

PMCID: 5947623
PMID: 29611893
DOI: 10.1111/1462-2920.14119

[…] membrane‐associated proteins, such as ferredoxin:nad+ oxidoreductases, cytochromes and periplasmic formate dehydrogenases and hydrogenases, have been reported to be involved in ret (sieber et al., ; grein et al., ). moreover, novel energy conversion mechanisms have been discovered in anaerobic microorganisms, for instance flavin‐based electron bifurcation and its reversal, electron confurcation […]


Gene expression and ultrastructure of meso‐ and thermophilic methanotrophic consortia

PMCID: 5947290
PMID: 29468803
DOI: 10.1111/1462-2920.14077

[…] ; venceslau et al., ). in contrast, the qmoabc complex is thought to receive electrons from reduced menaquinone for the reduction of the cytoplasmic aprab enyzme (pires et al., ; ramos et al., ; grein et al., ). the qrcabcd complex is suggested to deliver electrons from periplasmic cytochromes into the membrane menaquinone pool (venceslau et al., ), thus interacting with the qmo complex via […]


Engineering the Salt Inducible Ectoine Promoter Region of Halomonas elongata for Protein Expression in a Unique Stabilizing Environment

PMCID: 5924526
PMID: 29597294
DOI: 10.3390/genes9040184

[…] photometrically at 600 nm., vector pgfpuv was obtained from clontech laboratories, inc. (mountain view, ca, usa). vector pcq11-ftszmch for amplification of mcherry was kindly provided by fabian grein, institute of pharmaceutical microbiology, bonn, germany []. strain h. elongata kb1 [] was kindly provided by hans-jörg kunte, federal institute for materials research and testing, berlin, […]


Clinical and economic impact of the introduction of a nucleic acid amplification assay for Clostridium difficile

PMCID: 5713042
PMID: 29202797
DOI: 10.1186/s12941-017-0252-7

[…] in our institution appeared to be cost-neutral for patients with a negative diagnostic test., previous studies have assessed the impact of a diagnostic shift to a more sensitive assay for cdi. grein et al. examined the impact of a shift from eia, to a two-step testing algorithm, then to exclusive pcr testing in a community hospital and observed a 48% decrease in the number of tests […]


Ab Initio Approach to Second order Resonant Raman Scattering Including Exciton Phonon Interaction

PMCID: 5544768
PMID: 28779127
DOI: 10.1038/s41598-017-07682-y

[…] \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hslash {\omega }_{l}$$\end{document}ℏωl, especially close to the resonance, as first attempted in the nineties by grein and cardona using the theoretical and computational tools available at that time. this is shown in fig. , where the evolution of the diagonal component of the ipa raman spectrum with respect to […]


A mathematical model of Clostridium difficile transmission in medical wards and a cost effectiveness analysis comparing different strategies for laboratory diagnosis and patient isolation

PMCID: 5302372
PMID: 28187144
DOI: 10.1371/journal.pone.0171327

[…] used in each time period. sensitivities of the toxin a/b eia test between 32–98.7% and of the two-step test between 68–100% are reported [–]. we chose as our point estimates the values presented by grein et al. []: 70% sensitivity for the toxin a/b eia test and 88% sensitivity for the two-step test., a simulation model of c. difficile transmission was constructed (). the model includes three […]

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GREIN institution(s)
Division of Biostatistics and Bioinformatics, Department of Environmental Health, University of Cincinnati, Cincinnati, OH, USA; Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
GREIN funding source(s)
Supported by the National Institutes of Health [U54HL127624].

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