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GRep specifications


Unique identifier OMICS_33749
Name GRep
Alternative name Gene set Representation
Software type Application/Script
Interface Command line interface
Restrictions to use None
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Russ B. Altman

Publication for Gene set Representation

GRep citation


Gene Expression Variation Resolves Species and Individual Strains among Coral Associated Dinoflagellates within the Genus Symbiodinium

Genome Biol Evol
PMCID: 4824173
PMID: 26868597
DOI: 10.1093/gbe/evw019

[…] n agreement with previously published Clade B Symbiodinium transcriptomes (; ; ). After uploading reference assemblies into IPA software, we identified 19 relevant canonical pathways with significant gene set representation in all species, including fatty acid beta-oxidation, nitric oxide signaling, oxidative stress response, cell cycle control, RNA processes, and protein ubiquitination (supplemen […]

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GRep institution(s)
Department of Bioengineering, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA

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