GridMAT-MD specifications

Unique identifier:
OMICS_12892
Software type:
Application/Script
Restrictions to use:
None
Output data:
It generates two types of data: a two-dimensional contour plot depicting membrane thickness, and a polygon-based tessellation of the individual lipid headgroups.
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Stable
Name:
Grid based Membrane Analysis Tool for use with Molecular Dynamics
Interface:
Command line interface
Input data:
Only two files are needed as input for this program; a GROMACS-format coordinate file that contains a lipid bilayer that is oriented normal to the z-axis, and a parameter file that contains user-specified information about the coordinate file, desired output, and other parameters.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
2.0
Maintained:
Yes

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GridMAT-MD distribution

download

GridMAT-MD support

Documentation

Maintainer

  • David R. Bevan <>

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Publications

Institution(s)

Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA

Funding source(s)

Macromolecular Interfaces with Life Sciences (MILES); Integrative Graduate Education and Research Traineeship (IGERT); National Science Foundation. Grant Number: DGE-0333378; Institute for Critical Technology and Applied Science (ICTAS)

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