GridQTL protocols

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GridQTL specifications

Information


Unique identifier OMICS_07099
Name GridQTL
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 3.3.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jules Hernández-Sánchez <>

Publication for GridQTL

GridQTL in pipelines

 (3)
2016
PMCID: 4818457
PMID: 27037038
DOI: 10.1186/s12711-016-0199-8

[…] localization of the rts locus by genome-wide quantitative trait loci (qtl) analyses as described by hanna et al. []. we fitted additive and additive-dominant linear regression models within the gridqtl software package [] to identify regions that affect hair malformation i.e. for the scores for hs, hd, hlv, and rt. first, only sex was included as fixed effect to account for known […]

2016
PMCID: 5144136
PMID: 27929136
DOI: 10.1038/srep38673

[…] (https://sourceforge.net/p/lepmap2/wiki/home/). the map was drawn using mapchart v 2.3., the analysis was carried out using a half-sib regression on the mhs family, implemented in the online tool gridqtl (http://gridqtl.org.uk) and described by. this software implements a multi-marker approach of interval mapping in half-sib families; notably, this method of qtl analysis does not assume […]

2013
PMCID: 3789808
PMID: 23979937
DOI: 10.1534/g3.113.007237

[…] with 226 markers, each of which had genotyping success of the f2 offspring between 74% and 99%. sex-averaged linkage map distances were used for qtl mapping. the analyses were performed with gridqtl () by using the bcf2 portlet and fitting both additive and dominance effects at 1-cm intervals (file s1, file s2, and file s3). sex was included in the models as a fixed effect, and centroid […]


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GridQTL in publications

 (58)
PMCID: 5494477
PMID: 28111443
DOI: 10.5713/ajas.16.0562

[…] also according to cho et al []. eighteen of fa compositions were measured in f2 progeny. a full description of phenotypic analysis can be found in our previous publication []., we used a web-based gridqtl program to conduct qtl analysis (http://www.gridqtl.org.uk/). an interval mapping model based on least squares regression was used for qtl analysis, including the cofactors of sex, batch, […]

PMCID: 5144136
PMID: 27929136
DOI: 10.1038/srep38673

[…] (https://sourceforge.net/p/lepmap2/wiki/home/). the map was drawn using mapchart v 2.3., the analysis was carried out using a half-sib regression on the mhs family, implemented in the online tool gridqtl (http://gridqtl.org.uk) and described by. this software implements a multi-marker approach of interval mapping in half-sib families; notably, this method of qtl analysis does not assume […]

PMCID: 5052598
PMID: 27708388
DOI: 10.1038/srep34849

[…] calculated the genome size based on the quantified concentration and copies. the performance details were described in ., qtl mapping analysis was performed for two growth traits, bw and sl, using gridqtl (http://www.gridqtl.org.uk/) with the regression-interval mapping method. considering different recombination frequencies between sire and dam, we identified qtl regions using sire-based […]

PMCID: 5088374
PMID: 27383802
DOI: 10.5713/ajas.16.0183

[…] ii) the genome scan for a second locus was repeated, conditional on the qtl detected in the previous scan. linkage analysis of z chromosome was conducted by using half-sib qtl analysis option in gridqtl (http://www.gridqtl.org.uk). only males were used for the linkage analysis of z chromosome. multiple testing issues in qtl scans were addressed by calculation of highly significant, […]

PMCID: 4858896
PMID: 27150452
DOI: 10.1186/s12863-016-0370-9

[…] range of 0.30–0.85. the average information content at the genome level was 0.63 []., the qtl analysis were performed using regression techniques [] implemented by the online software package gridqtl []. gridqtl is a portlet environment (available at http://www.gridqtl.org.uk/) that permits the analysis of computationally intensive datasets., the qtl analysis was carried out using two […]


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GridQTL institution(s)
Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Ashworth Laboratories, Edinburgh, UK

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