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|Interface||Command line interface, Graphical user interface|
|Restrictions to use||None|
|Input data||Genomic, proteomic, and metabolomic data|
|Operating system||Unix/Linux, Mac OS, Windows|
|License||GNU General Public License version 3.0|
No version available
- Documentation: http://kwanjeeraw.github.io/grinn/document.html
- person_outline Kwanjeera W.
Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada
[…] igh humidity is essential for growth of most mesophilic fungi and was considered a good predictor of fungal prevalence. The total variance explained by the RDA model (ca. 22%) was higher than that of Grinn-Gofroń and Bosiacka () (ca. 16.5%) and suggested that mean air temperature was the most important factor affecting the composition of airborne fungal spores. Overall, our results suggest that th […]
A comparative study of hourly and daily relationships between selected meteorological parameters and airborne fungal spore composition
[…] analysis (DCA) results detected a linear structure of the spore data. Detailed information about the applied multivariate methods, stepwise forward selection and tests of significance is available in Grinn-Gofroń and Bosiacka ().Redundancy among the meteorological variables was explored with the variance inflation factor (VIF). VIF analysis (available in CANOCO) is a diagnostic tool used to identi […]
Computational dynamic approaches for temporal omics data with applications to systems medicine
[…] he correlation analysis with other types of relationships such as biochemical reactions and molecular structural and mass spectral similarity (MetaMapR).In addition, they provide a dynamic interface (Grinn) to integrate gene, protein, and metabolite data using more advanced biological-network-based approaches such as Gaussian graphical models, partial correlation and Bayesian networks for omics da […]
Genomic, Proteomic, and Metabolomic Data Integration Strategies
[…] tools such as MetaMapR incorporate correlation analysis with other relationships such as biochemical reactions and molecular structural and mass spectral similarity. The recently developed R package Grinn implements a Neo4j graph database to provide a dynamic interface to rapidly integrate gene, protein, and metabolite data using both biological-network-based and correlation-based approaches.Whil […]
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