GRNInfer statistics
Protocols
GRNInfer specifications
Information
Unique identifier | OMICS_24034 |
---|---|
Name | GRNInfer |
Alternative names | Gene Regulatory Network Inference, GNR |
Software type | Application/Script |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Computer skills | Advanced |
Version | 1.0 |
Stability | Stable |
Maintained | Yes |
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Maintainers
- person_outline Luonan Chen <>
- person_outline Dong Xu <>
- person_outline Xiang-Sun Zhang <>
Publication for Gene Regulatory Network Inference
GRNInfer in pipeline
[…] regression; cs: control strength; em: expectation-maximization; elu: elutriation; go: gene ontology; tf: transcription factor; tfa: transcription factor activity; nca: network component analysis; grninfer: gene regulatory network inference; rrna: ribosomal rna; utr: untranslated region; rnp: nucleolar ribonucleoprotein; rbps: rna binding proteins; rpm: random periods model., the authors […]
GRNInfer in publications
(10)[…] algorithm. the top 50 genes, including irs1/2, were used as target genes to determine the gene regulatory networks and next the sub-networks of irs1 and irs2 in hcv-huh7 and huh7 cells using gene regulatory network inference tool, an algorithm based on linear programming and the decomposition process. the irs1/2 sub-networks were divided into upstream/downstream groups […]
High EGFR_1 Inside Out Activated Inflammation Induced Motility through SLC2A1 CCNB2 HMMR KIF11 NUSAP1 PRC1 UBE2C
[…] 48 different pearson mutual-positive-correlation epidermal growth factor receptor (egfr_1)-activatory molecular feedback, up- and down-stream network was constructed from 171 overlapping of 366 grninfer and 223 pearson under egfr_1 cc ≥0.25 in high lung adenocarcinoma compared with low human normal adjacent tissues. our identified egfr_1 inside-out upstream activated molecular network […]
[…] compared with lower human normal adjacent tissues from the corresponding comp-stimulated (≥0.25) or inhibited (pearson cc≤−0.25) overlapping molecules of pearson correlation coefficient (cc) and grninfer, respectively. comp complete different activated and inhibited (all no positive correlation, pearson cc< 0.25) mechanisms networks of higher lung adenocarcinoma and lower human normal […]
Activated amelogenin Y linked (AMELY) regulation and angiogenesis in human hepatocellular carcinoma by biocomputation
[…] with high expression (fold change ≥2) were identified and computed., amely-activated upstream regulation molecular networks in non-tumor hepatitis/cirrhotic tissues and hcc were constructed by grninfer () and published studies (–), and illustrated by gvedit tool, respectively., the biological processes of amely-activated upstream regulation networks in non-tumor hepatitis/cirrhotic tissues […]
[…] go terms from the same activated pthlh go-molecular network of hcc compared with the corresponding activated go-molecular network of no-tumor hepatitis/cirrhotic tissues, and constructed network by grninfer [] and our articles [–] and illustrated by gvedit tool., biological processes and occurrence numbers of the same activated high expression (fold change ≥2) pthlh feedback-mediated cell […]
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