GRNInfer protocols

GRNInfer specifications


Unique identifier OMICS_24034
Name GRNInfer
Alternative names Gene Regulatory Network Inference, GNR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes



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  • person_outline Luonan Chen <>
  • person_outline Dong Xu <>
  • person_outline Xiang-Sun Zhang <>

Publication for Gene Regulatory Network Inference

GRNInfer IN pipeline

PMCID: 2758837
PMID: 19758441
DOI: 10.1186/1752-0509-3-93

[…] regression; cs: control strength; em: expectation-maximization; elu: elutriation; go: gene ontology; tf: transcription factor; tfa: transcription factor activity; nca: network component analysis; grninfer: gene regulatory network inference; rrna: ribosomal rna; utr: untranslated region; rnp: nucleolar ribonucleoprotein; rbps: rna binding proteins; rpm: random periods model., the authors […]

GRNInfer institution(s)
Department of Electrical Engineering and Electronics, Osaka Sangyo University, Osaka, Japan; Academy of Mathematics and Systems Science, CAS, Beijing, China; Computer Science Department and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA; Institute of Systems Biology, Shanghai University, Shanghai, China
GRNInfer funding source(s)
Supported by project Bioinformatics, Bureau of Basic Science, CAS and by a USDA grant CSREES 2004–25,604-14,708.

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