GRNInfer protocols
GRNInfer specifications
Information
| Unique identifier | OMICS_24034 |
|---|---|
| Name | GRNInfer |
| Alternative names | Gene Regulatory Network Inference, GNR |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Stable |
| Maintained | Yes |
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Maintainers
- person_outline Luonan Chen <>
- person_outline Dong Xu <>
- person_outline Xiang-Sun Zhang <>
Publication for Gene Regulatory Network Inference
2006 Bioinformatics
PMID: 16864593
DOI: 10.1093/bioinformatics/btl396
GRNInfer IN pipeline
2009
PMCID: 2758837
PMID: 19758441
DOI: 10.1186/1752-0509-3-93
[…] regression; cs: control strength; em: expectation-maximization; elu: elutriation; go: gene ontology; tf: transcription factor; tfa: transcription factor activity; nca: network component analysis; grninfer: gene regulatory network inference; rrna: ribosomal rna; utr: untranslated region; rnp: nucleolar ribonucleoprotein; rbps: rna binding proteins; rpm: random periods model., the authors […]
GRNInfer institution(s)
Department of Electrical Engineering and Electronics, Osaka Sangyo University, Osaka, Japan; Academy of Mathematics and Systems Science, CAS, Beijing, China; Computer Science Department and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA; Institute of Systems Biology, Shanghai University, Shanghai, China
GRNInfer funding source(s)
Supported by project Bioinformatics, Bureau of Basic Science, CAS and by a USDA grant CSREES 2004–25,604-14,708.
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