GROC-SVs statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GROC-SVs
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Tool usage distribution map

This map represents all the scientific publications referring to GROC-SVs per scientific context
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Associated diseases

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Popular tool citations

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GROC-SVs specifications

Information


Unique identifier OMICS_12774
Name GROC-SVs
Alternative name Genome-wide Reconstruction of Complex Structural Variants
Software type Pipeline/Workflow
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format FASTA, BED, BEDPE
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
idba_ud, samtools, bwa-mem
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Arend Sidow

Publication for Genome-wide Reconstruction of Complex Structural Variants

GROC-SVs citation

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Genome wide reconstruction of complex structural variants using read clouds

2017
Nat Methods
PMCID: 5578891
PMID: 28714986
DOI: 10.1038/nmeth.4366

[…] GROC-SVs is implemented as a multi-sample analysis pipeline, allowing the simultaneous analysis of multiple tumor and matched normal samples, or multiple related individuals.10× Genomics sequencing li […]


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GROC-SVs institution(s)
Genomescale Measurements Group, National Institute of Standards and Technology, Gaithersburg, MA, USA; Joint Initiative for Metrology in Biology, Stanford, CA, USA; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Computer Science, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA
GROC-SVs funding source(s)
This work was supported by the Stanford Center for Computational, Evolutionary and Human Genomics, R01CA183904 and the BRCA Foundation.

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