GROK specifications

Information


Unique identifier OMICS_15434
Name GROK
Alternative name Genomic Region Operation Toolkit
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM, SAM, BED, BedGraph, CSV, FASTQ, GFF/GTF, VCF, Wiggle
Output format BAM, SAM, BED, BedGraph, CSV, FASTQ, GFF/GTF, VCF, Wiggle
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python, R
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.1.1
Stability Stable
Source code URL http://csbi.ltdk.helsinki.fi/grok/files/grok-1.1.1.tar.gz
Maintained Yes

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Documentation


Maintainer


  • person_outline Sampsa Hautaniemi <>

Publication for Genomic Region Operation Toolkit

GROK funding source(s)
This work was supported by the Academy of Finland (125826, Center of Excellence in Cancer Genetics Research), the Sigrid Jusélius Foundation, the Finnish Cancer Organizations, Biocentrum Helsinki, ERASysBio+ EU ERANET Plus scheme in FP7 (project SYNERGY), and the Helsinki Biomedical Graduate Program.

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