GROOT specifications

Information


Unique identifier OMICS_28203
Name GROOT
Alternative name Graphing Resistance Out Of meTagenomes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some short sequence reads.
Input format FASTQ
Output data Some variation graph alignments, linear alignments and classified resistance genes.
Output format GFA,BAM,TXT
Biological technology Illumina, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages GO
License MIT License
Computer skills Advanced
Version 0.5
Stability Stable
Registration required No
Maintained Yes

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Documentation


Maintainers


  • person_outline Martyn D. Winn <>
  • person_outline Will Rowe <>

Publication for Graphing Resistance Out Of meTagenomes

GROOT institution(s)
Institute of Integrative Biology, The University of Liverpool Scientific Computing Department and The Hartree Centre, STFC Daresbury Laboratory, Liverpool, UK
GROOT funding source(s)
Supported in part by the STFC Hartree Centre’s Innovation Return on Research Programme and by the Department for Business, Energy & Industrial Strategy.

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