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GSA specifications


Unique identifier OMICS_26980
Name GSA
Alternative name Gene set analysis
Interface Web user interface
Restrictions to use None
Input format TSV,(ZIP+CEL)
Output data A ranked table of differentially expressed meta-genes/pathways and a heat map and box plots for the top-ranked gene sets visualize how the meta- gene expression values differ across different sample groups.
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Enrico Glaab
  • person_outline Natalio Krasnogor
  • person_outline Jonathan Garibaldi

Publication for Gene set analysis

GSA citations


Ecological Restoration of Antibiotic Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows

PMCID: 5859144
PMID: 29594071
DOI: 10.3389/fcimb.2018.00079

[…] ndex in both foregut and hindgut demonstrated a high sequencing depth in current analysis (Supplementary Figure ). 16S rRNA gene sequencing reads were deposited in the Genome Sequence Archive ( in the BIG Data Center under accession numbers PRJCA000455. […]


Functional Analysis of the FZF1 Genes of Saccharomyces uvarum

Front Microbiol
PMCID: 5808186
PMID: 29467731
DOI: 10.3389/fmicb.2018.00096

[…] y Nextomics Biosciences Co. Ltd using Illumina HiSeq™. The RNA-Seq data were submitted to the Genome Sequence Archive of Beijing Institute of Genomics (BIG) Data Center (publicly accessible at, Accession No. PRJCA000414). Transcriptome analysis was performed using DEGseq (Wang et al., ) and DESeq (Anders and Huber, ). […]


Constitutive Expression of miR408 Improves Biomass and Seed Yield in Arabidopsis

Front Plant Sci
PMCID: 5789609
PMID: 29422907
DOI: 10.3389/fpls.2017.02114

[…] ome Sequence Archive () in BIG Data Center (), Beijing Institute of Genomics (BIG), Chinese Academy of Sciences, under accession number CRA000553 that are publicly accessible at […]


Ribosome Profiling Reveals Genome wide Cellular Translational Regulation upon Heat Stress in Escherichia coli

PMCID: 5673677
PMID: 29031842
DOI: 10.1016/j.gpb.2017.04.005
call_split See protocol

[…] Genome Sequence Archive in BIG Data Center , Beijing Institute of Genomics (BIG), Chinese Academy of Sciences, under accession number CRA 000347, that is publicly accessible at […]


Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition

PLoS Genet
PMCID: 5362240
PMID: 28273089
DOI: 10.1371/journal.pgen.1006664

[…] 0.001 were considered as differentially expressed for scatter plot representations and for GO term analysis using GOseq []. The raw sequencing data have been submitted to the Genome Sequence Archive (GSA) database with the accession number PRJCA000264. […]


Down Regulation of EPAS1 Transcription and Genetic Adaptation of Tibetans to High Altitude Hypoxia

Mol Biol Evol
PMCID: 5400376
PMID: 28096303
DOI: 10.1093/molbev/msw280

[…] bases (Q-score ≤ 5) were removed. On an average, we generated 24.5 million paired-end reads for each sample. The RNAseq data was deposited in an open-access archive (Genome Sequence Achieve at and the accession numbers are PRJCA000268 and PRJCA000269.Pre-processed RNA-Seq reads were mapped to the genome using split-mapping aligner STAR (release 2.4.1a) (), and the resulting b […]


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GSA institution(s)
School of Computer Science, Nottingham University, Nottingham, UK
GSA funding source(s)
Supported by the Marie-Curie Early-Stage-Training programme (grant MEST-CT-2004-007597), by the UK Engineering and Physical Sciences Research Council (EP/E017215/1) and the Biotechnology and Biological Sciences Research Council (BB/F01855X/1).

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