GSAtools protocols

GSAtools specifications


Unique identifier OMICS_18199
Name GSAtools
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements GROMACS
Maintained Yes



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  • person_outline Alessandro Pandini <>
  • person_outline Jens Kleinjung <>

Publication for GSAtools

GSAtools IN pipeline

PMCID: 5690683
PMID: 29108014
DOI: 10.1371/journal.pcbi.1005826

[…] (see s8 table for a list of the excluded residues). all the residues in the protein were used for the rmsd, rmsf and secondary structure analyses., the analyses were performed using gromacs and gsatools [68], together with in-house r scripts using the bio3d [69] library. networks were visualised with the xpyder [70] plugin for pymol. a more detailed description of the analyses performed […]

GSAtools institution(s)
Randall Division of Cell and Molecular Biophysics, King’s College London, London, UK; The Thomas Young Centre for Theory and Simulation of Materials, London, UK; Division of Mathematical Biology, MRC National Institute for Medical Research, London, UK
GSAtools funding source(s)
Supported by the Medical Research Council (U117581331); the British Heart Foundation (FS/12/41/29724); the Biotechnology and Biological Sciences Research Council (BB/I023291/1 and BB/H018409/1).

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