GSDS statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

GSDS specifications

Information


Unique identifier OMICS_07041
Name GSDS
Alternative name Gene Structure Display Server
Interface Web user interface
Restrictions to use None
Output data A generated figure as a vector graphic or raster graphic.
Output format SVG,PNG,PDF
License GNU General Public License version 3.0
Computer skills Basic
Version 2.0
Stability Stable
Source code URL http://gsds.cbi.pku.edu.cn/source_code/gsds_v2.tar.gz
Maintained Yes

Maintainers


  • person_outline Ge Gao
  • person_outline Bo Hu

Additional information


http://gsds.cbi.pku.edu.cn/README.txt

Publications for Gene Structure Display Server

GSDS citations

 (317)
call_split

Genome wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley

2018
Sci Rep
PMCID: 5935748
PMID: 29728569
DOI: 10.1038/s41598-018-25349-0
call_split See protocol

[…] The Gene Structure Display Server program (http://gsds.cbi.pku.edu.cn/index.php) was used to predict the exon/intron structure of each HvSPL gene by comparing their coding and genomic sequences. SPL seque […]

library_books

Molecular Characterization of SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL) Gene Family in Betula luminifera

2018
Front Plant Sci
PMCID: 5945835
PMID: 29780401
DOI: 10.3389/fpls.2018.00608

[…] sy.org/compute_pi/). Intron/exon structures were displayed by mapping the cDNA sequences of BlSPLs to the corresponding genomic sequences using the Gene Structure Display Sever 2 (Hu et al., ; http://gsds.cbi.pku.edu.cn/). Conserved domains of BlSPLs were identified using Pfam (http://pfam.sanger.ac.uk) and the Conserved Domain Database (CDD, http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi) wi […]

library_books

Genome wide identification of the auxin response factor gene family in Cicer arietinum

2018
BMC Genomics
PMCID: 5921756
PMID: 29703137
DOI: 10.1186/s12864-018-4695-9

[…] from the NCBI using custom R scripts. Multiple sequence alignment and phylogenetic tree construction were performed using MUSCLE and MEGA, respectively. Exon-intron distributions were analyzed using GSDS server. Gene duplications were determined using the PGDD database and the orthologous relationships were visualized using Circoletto. Amino acid content of the MR domain was calculated using the […]

call_split

The YUCCA Auxin WOX11 Module Controls Crown Root Development in Rice

2018
Front Plant Sci
PMCID: 5925970
PMID: 29740464
DOI: 10.3389/fpls.2018.00523
call_split See protocol

[…] the unrooted phylogenetic tree by the neighbor joining method with a bootstrap analysis of 1000 replicates using MEGA 7.0 (). The exon-intron structure of each OsYUC gene was identified by using the Gene Structure Display Server (). […]

library_books

Genome Wide Analyses of Calcium Sensors Reveal Their Involvement in Drought Stress Response and Storage Roots Deterioration after Harvest in Cassava

2018
Genes
PMCID: 5924563
PMID: 29671773
DOI: 10.3390/genes9040221

[…] fied CaMs, CMLs, and CBLs had at least one EF-hand domain, indicating their typical family features of calcium binding.Additionally, the exon-intron organizations of these genes were tested using the GSDS database (). For the CaM family, group A shows two to three exons and group B contains four exons. For the CML family, group A shows three to five exons, group B has four exons, group C has one t […]

library_books

Genome wide analysis of basic helix loop helix superfamily members in peach

2018
PLoS One
PMCID: 5901983
PMID: 29659634
DOI: 10.1371/journal.pone.0195974

[…] were then drawn using the Circos tool (http://mkweb.bcgsc.ca/circos). The structural features of the peach bHLH genes, including exon and intron numbers as well as locations, were analyzed using the Gene Structure Display Server (GSDS) online tool (http://gsds.cbi.pku.edu.cn/). […]

Citations

Looking to check out a full list of citations?

GSDS institution(s)
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China; College of Life Science, Beijing Normal University, Beijing, China; Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
GSDS funding source(s)
Supported by the China National 973 Program [2011CBA01103], 863 Programs [2006AA02Z334, 2007AA02Z165], and the State Key Laboratory of Protein and Plant Gene Research and supported in part by the National Outstanding Youth Talent Initiative Program and partly by the China Postdoctoral Science Foundation Grant [2014M560017].

GSDS review

star_border star_border star_border star_border star_border
star star star star star
Anonymous user #5864's avatar image No country

Anonymous user #5864

star_border star_border star_border star_border star_border
star star star star star
Web
nice tool for drawing gene structure