GSDS pipeline

GSDS specifications

Information


Unique identifier OMICS_07041
Name GSDS
Alternative name Gene Structure Display Server
Interface Web user interface
Restrictions to use None
Output data A generated figure as a vector graphic or raster graphic.
Output format SVG,PNG,PDF
License GNU General Public License version 3.0
Computer skills Basic
Version 2.0
Stability Stable
Source code URL http://gsds.cbi.pku.edu.cn/source_code/gsds_v2.tar.gz
Maintained Yes

Maintainers


  • person_outline Ge Gao <>
  • person_outline Bo Hu <>

Additional information


http://gsds.cbi.pku.edu.cn/README.txt

Publications for Gene Structure Display Server

GSDS IN pipelines

 (24)
2018
PMCID: 5851622
PMID: 29538447
DOI: 10.1371/journal.pone.0194335

[…] parameter were estimated. sumt command is used to build a consensus tree from remaining 75% of sampled trees using 50% majority rule. phylogenetic trees were viewed using dendroscope 3 program[38]., gene structure display server (gsds)[39] (http://gsds.cbi.pku.edu.cn/) is used to analyze gene structure. representative gene sequences of each phyla of animal kingdom are submitted to gsds server […]

2018
PMCID: 5855805
PMID: 29462897
DOI: 10.3390/ijms19020583

[…] version 6.0 [58,59]. the aligned full-length sequence data were used for the phylogenetic tree using the neighbor-joining method with 1000 bootstraps. structure of sacmi gene was generated using gsds 2.0 (center for bioinformatics (cbi), peking university, beijing, china) [60]., s. aculeatissimum seeds were sown in sterilized soil and cultured at 25 °c/15 °c, with a photoperiod of 16 h light […]

2018
PMCID: 5877630
PMID: 29517986
DOI: 10.3390/ijms19030769

[…] metropolitan university, tokyo, japan) program with the pairwise gap deletion option [52]. the bootstrap analysis was conducted with 1000 replicates., exon-intron structures were analyzed using the gsds server (available online: http://gsds.cbi.pku.edu.cn/) [53]. meanwhile, the physical positions of all cotton sweet genes on chromosomes were determined according to the genome annotation files […]

2018
PMCID: 5877630
PMID: 29517986
DOI: 10.3390/ijms19030769

[…] program with the pairwise gap deletion option [52]. the bootstrap analysis was conducted with 1000 replicates., exon-intron structures were analyzed using the gsds server (available online: http://gsds.cbi.pku.edu.cn/) [53]. meanwhile, the physical positions of all cotton sweet genes on chromosomes were determined according to the genome annotation files downloaded from the cottongen website […]

2017
PMCID: 5360731
PMID: 28382047
DOI: 10.3389/fpls.2017.00389

[…] the peach ugt intron map was constructed by determining the intron length, splice sites, phases, and positions in the genome. the exon–intron structure and intron phases were acquired by the online gene structure display server 2.04. the intron can be inserted anywhere in the transcript, they are located either between codons or within codons which termed as intron phases, and the phases […]

GSDS institution(s)
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China; College of Life Science, Beijing Normal University, Beijing, China; Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
GSDS funding source(s)
Supported by the China National 973 Program [2011CBA01103], 863 Programs [2006AA02Z334, 2007AA02Z165], and the State Key Laboratory of Protein and Plant Gene Research and supported in part by the National Outstanding Youth Talent Initiative Program and partly by the China Postdoctoral Science Foundation Grant [2014M560017].

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