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GtEncseq specifications

Information


Unique identifier OMICS_16091
Name GtEncseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C, C++, Lua, Python, Ruby
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Sascha Steinbiss

Publication for GtEncseq

GtEncseq citation

library_books

Data compression for sequencing data

2013
PMCID: 3868316
PMID: 24252160
DOI: 10.1186/1748-7188-8-25

[…] compression method is rather constrained. To our knowledge, the most successful, in terms of efficiency and flexibility, storage system for biosequences was presented by Steinbiss and Kurtz []. Their GtEncseq solution accepts several common sequence formats (FASTA, GenBank, EMBL, FASTQ), compresses the input, provides fast random access to FASTA data, stores metadata, etc. Accessing single bases f […]


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GtEncseq institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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