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GtEncseq specifications
Information
| Unique identifier | OMICS_16091 |
|---|---|
| Name | GtEncseq |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | C, C++, Lua, Python, Ruby |
| License | BSD 3-clause “New” or “Revised” License |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Versioning
No version available
Documentation
- Documentation: http://genometools.org/tools/gt_encseq.html
Maintainer
- person_outline Sascha Steinbiss
Publication for GtEncseq
2012 IEEE Trans Comput Biol Bioinform
PMID: 22084150
GtEncseq citation
library_books
Data compression for sequencing data
2013
PMCID: 3868316
PMID: 24252160
DOI: 10.1186/1748-7188-8-25
[…] compression method is rather constrained. To our knowledge, the most successful, in terms of efficiency and flexibility, storage system for biosequences was presented by Steinbiss and Kurtz []. Their GtEncseq solution accepts several common sequence formats (FASTA, GenBank, EMBL, FASTQ), compresses the input, provides fast random access to FASTA data, stores metadata, etc. Accessing single bases f […]
GtEncseq institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany
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