GUIDEseq specifications

Unique identifier:
OMICS_18333
Interface:
Command line interface
Input data:
A sequence.
Output data:
A prediction score for each sequence.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM, UMI
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.6.1
Requirements:
GenomicRanges, BiocGenerics

versioning

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GUIDEseq distribution

download

GUIDEseq support

Documentation

Maintainer

  • Lihua Julie Zhu <>

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Publications

Institution(s)

Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA, USA; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA; Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA; Genentech, San Francisco, CA, USA; Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA

Funding source(s)

Supported by NIH grant R01AI117839 & R01HL093766.

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