GUIDEseq specifications

Information


Unique identifier OMICS_18333
Name GUIDEseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A sequence.
Input format BAM, UMI
Output data A prediction score for each sequence.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.1
Stability Stable
Requirements GenomicRanges, BiocGenerics
Maintained Yes

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Documentation


Maintainer


  • person_outline Lihua Julie Zhu <>

Publication for GUIDEseq

GUIDEseq institution(s)
Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA, USA; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA; Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA; Genentech, San Francisco, CA, USA; Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA
GUIDEseq funding source(s)
Supported by NIH grant R01AI117839 & R01HL093766.

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