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Gutentag specifications

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Unique identifier OMICS_02396
Name Gutentag
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Gutentag

Gutentag citations

 (6)
library_books

Postnatal Microstructural Developmental Trajectory of Corpus Callosum Subregions and Relationship to Clinical Factors in Very Preterm Infants

2018
PMCID: 5954149
PMID: 29765059
DOI: 10.1038/s41598-018-25245-7

[…] funded in part by the national institutes of neurological disorders and stroke/nih grants 5r01-ns094200 and 5r01-ns096037 and the research institute at nationwide children’s hospital. we thank julie gutentag for serving as the study coordinator and patricia luzader and jennifer notestine for supporting the magnetic resonance imaging data acquisition. we also sincerely thank dr. roopali bapat […]

library_books

Software aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry

2017
PMCID: 5665424
PMID: 29091918
DOI: 10.1371/journal.pone.0186461

[…] ms/ms peptide data interpretation. these approaches include four main groups: database searching (sequest, mascot, etc.), de novo peptide sequencing (peaks, pepnovo, etc.), peptide sequence tagging (gutentag) and consensus of multiple search engines (scaffold) []. these ms-based proteomics approaches have difficulties with sequencing cyclic peptides without prior linearization […]

library_books

Identification and analysis of divergent immune gene families within the Tasmanian devil genome

2015
PMCID: 4662006
PMID: 26611146
DOI: 10.1186/s12864-015-2206-9

[…] of 141 tasmanian devil immune genes including cytokines, chemokines, igs and tcrs. all identified sequences have been deposited into a publicly available database (http://hp580.angis.org.au/tagbase/gutentag/)., a total of 40 interleukin genes were predicted from the tasmanian devil genome (table ; additional file ). of these 28 were orthologs of human interleukins while the remaining 11 […]

library_books

Identification, characterisation and expression analysis of natural killer receptor genes in Chlamydia pecorum infected koalas (Phascolarctos cinereus)

2015
PMCID: 4608214
PMID: 26471184
DOI: 10.1186/s12864-015-2035-x

[…] all putative koala nk sequences were used as queries in blastp against swissprot. all identified sequences have been deposited into a publicly available database (http://hp580.angis.org.au/tagbase/gutentag/). for phylogenetic tree construction, protein sequences were aligned using muscle [] through the software package mega6 [], using default parameters. phylogenetic trees were constructed […]

library_books

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

2008
PMCID: 2665034
PMID: 18586734
DOI: 10.1093/bioinformatics/btn189

[…] algorithm class: sequest (eng et al., ; yates et al., ), ommsa (geer et al., ), probid (zhang et al., ), pepnovo (frank and pevzner, ), lutefisk (taylor and johnson, ), inspect (tanner et al., ) and gutentag (tabb et al., ). these algorithms were chosen to represent the diversity of existing ms/ms analysis software and according to source code and executable availability. parameters […]

library_books

Computational Methods for Protein Identification from Mass Spectrometry Data

2008
PMCID: 2323404
PMID: 18463710
DOI: 10.1371/journal.pcbi.0040012

[…] the first de novo sequencing methods were becoming available []. a number of popular packages available for de novo sequence interpretation and subsequent tag-based searching are listed below in ., gutentag [] is a popular tag-based package released in 2003 by the same group responsible for the popular pff package sequest, and is available free for nonprofit organizations. lutefisk is available […]


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Gutentag institution(s)
SR11 Department of Cell Biology, The Scripps Research Institute, La Jolla, CA, USA

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