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Number of citations per year for the bioinformatics software tool Gutentag
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Protocols

Gutentag specifications

Information


Unique identifier OMICS_02396
Name Gutentag
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Gutentag

Gutentag citations

 (7)
library_books

Software aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry

2017
PLoS One
PMCID: 5665424
PMID: 29091918
DOI: 10.1371/journal.pone.0186461

[…] MS/MS peptide data interpretation. These approaches include four main groups: database searching (SEQUEST, MASCOT, etc.), de novo peptide sequencing (PEAKS, PepNovo, etc.), peptide sequence tagging (GutenTag) and consensus of multiple search engines (Scaffold) []. These MS-based proteomics approaches have difficulties with sequencing cyclic peptides without prior linearization and they are limite […]

library_books

Identification and analysis of divergent immune gene families within the Tasmanian devil genome

2015
BMC Genomics
PMCID: 4662006
PMID: 26611146
DOI: 10.1186/s12864-015-2206-9

[…] y TBLASTN [] searches to the Tasmanian devil genome using the relevant sequence in opossum or wallaby from the immunome database for marsupials and monotremes (IDMM; http://hp580.angis.org.au/tagbase/gutentag; []), or the relevant human sequences from UniProt when not available in marsupials. In addition, HMMER [] searches were used to identify genes in families likely to have expansions. To do th […]

library_books

Identification, characterisation and expression analysis of natural killer receptor genes in Chlamydia pecorum infected koalas (Phascolarctos cinereus)

2015
BMC Genomics
PMCID: 4608214
PMID: 26471184
DOI: 10.1186/s12864-015-2035-x

[…] The data sets supporting the results of the article are available in the Immunome Database for Monotremes and Marsupials [http://hp580.angis.org.au/tagbase/gutentag/]. […]

library_books

Mass spectrometry based protein identification by integrating de novo sequencing with database searching

2013
BMC Bioinformatics
PMCID: 3549845
PMID: 23369017
DOI: 10.1186/1471-2105-14-S2-S24

[…] , the identification process is able to incorporate information from the two heterogeneous approaches. This integrative approach has great potential and several methods have been developed, including GutenTag [], Inspect [], MultiTag [], etc. These methods perform favourably compared to existing database search and de novo sequencing methods. However, current implementation of this integrative app […]

library_books

Ancient Antimicrobial Peptides Kill Antibiotic Resistant Pathogens: Australian Mammals Provide New Options

2011
PLoS One
PMCID: 3166071
PMID: 21912615
DOI: 10.1371/journal.pone.0024030

[…] GENESH+ based on HMMER results. These were confirmed by BLAST against NCBI's protein nr database. Platypus and tammar cathelicidin sequences can be downloaded from http://hp580.angis.org.au/tagbase/gutentag/. GenBank Accessions for previously published cathlicidin sequences , are MaeuCath1 EF624481.1, MaeuCath2 EF624482.1, MaeuCath3 EF624483.1, MaeuCath4 EF624484.1, MaeuCath5 EF624485, MaeuCath […]

library_books

Immunome database for marsupials and monotremes

2011
BMC Immunol
PMCID: 3173380
PMID: 21854560
DOI: 10.1186/1471-2172-12-48

[…] IDMM is publicly available at http://hp580.angis.org.au/tagbase/gutentag/. […]


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Gutentag institution(s)
SR11 Department of Cell Biology, The Scripps Research Institute, La Jolla, CA, USA

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