Gutentag statistics

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Gutentag specifications

Information


Unique identifier OMICS_02396
Name Gutentag
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Gutentag

Gutentag in publications

 (6)
PMCID: 5954149
PMID: 29765059
DOI: 10.1038/s41598-018-25245-7

[…] funded in part by the national institutes of neurological disorders and stroke/nih grants 5r01-ns094200 and 5r01-ns096037 and the research institute at nationwide children’s hospital. we thank julie gutentag for serving as the study coordinator and patricia luzader and jennifer notestine for supporting the magnetic resonance imaging data acquisition. we also sincerely thank dr. roopali bapat […]

PMCID: 5665424
PMID: 29091918
DOI: 10.1371/journal.pone.0186461

[…] ms/ms peptide data interpretation. these approaches include four main groups: database searching (sequest, mascot, etc.), de novo peptide sequencing (peaks, pepnovo, etc.), peptide sequence tagging (gutentag) and consensus of multiple search engines (scaffold) []. these ms-based proteomics approaches have difficulties with sequencing cyclic peptides without prior linearization […]

PMCID: 4662006
PMID: 26611146
DOI: 10.1186/s12864-015-2206-9

[…] of 141 tasmanian devil immune genes including cytokines, chemokines, igs and tcrs. all identified sequences have been deposited into a publicly available database (http://hp580.angis.org.au/tagbase/gutentag/)., a total of 40 interleukin genes were predicted from the tasmanian devil genome (table ; additional file ). of these 28 were orthologs of human interleukins while the remaining 11 […]

PMCID: 4608214
PMID: 26471184
DOI: 10.1186/s12864-015-2035-x

[…] all putative koala nk sequences were used as queries in blastp against swissprot. all identified sequences have been deposited into a publicly available database (http://hp580.angis.org.au/tagbase/gutentag/). for phylogenetic tree construction, protein sequences were aligned using muscle [] through the software package mega6 [], using default parameters. phylogenetic trees were constructed […]

PMCID: 2665034
PMID: 18586734
DOI: 10.1093/bioinformatics/btn189

[…] algorithm class: sequest (eng et al., ; yates et al., ), ommsa (geer et al., ), probid (zhang et al., ), pepnovo (frank and pevzner, ), lutefisk (taylor and johnson, ), inspect (tanner et al., ) and gutentag (tabb et al., ). these algorithms were chosen to represent the diversity of existing ms/ms analysis software and according to source code and executable availability. parameters […]


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Gutentag institution(s)
SR11 Department of Cell Biology, The Scripps Research Institute, La Jolla, CA, USA

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