GView pipeline

GView specifications

Information


Unique identifier OMICS_13423
Name GView
Alternative name GView Server
Interface Web user interface
Restrictions to use None
Output format PNG, JPG, SVG
Programming languages Java
License GNU Affero General Public License version 3
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Gary Van Domselaar <>

Information


Unique identifier OMICS_13423
Name GView
Alternative name GView Server
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Output format PNG, JPG, SVG
Operating system Unix/Linux
Programming languages Java
License GNU Affero General Public License version 3
Computer skills Medium
Version 1.7
Stability Stable
Source code URL https://www.gview.ca/files/release/1.7/gview-1.7-src.zip
Maintained Yes

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Versioning


Add your version

Documentation


Maintainer


  • person_outline Gary Van Domselaar <>

Publications for GView

GView IN pipelines

 (8)
2018
PMCID: 5766633
PMID: 29330501
DOI: 10.1038/s41598-017-18934-2

[…] method. the sequences of primers are listed in supplementary table s4. a blastn homology search50 was performed for serv sequences; aligned images of homologous regions were visualized with the gview server (https://server.gview.ca/)55 and act program56. in order to verify mutations among serv regions, a mapping analysis against a previously deposited consensus serv sequence found […]

2018
PMCID: 5766633
PMID: 29330501
DOI: 10.1038/s41598-017-18934-2

[…] primers are listed in supplementary table s4. a blastn homology search50 was performed for serv sequences; aligned images of homologous regions were visualized with the gview server (https://server.gview.ca/)55 and act program56. in order to verify mutations among serv regions, a mapping analysis against a previously deposited consensus serv sequence found in the genome of vero 0111 cells […]

2018
PMCID: 5867892
PMID: 29558450
DOI: 10.3390/genes9030171

[…] draft sequences of the l. monocytogenes genome (supplementary material file s1). the genome sequences were downloaded from the genbank database., a comparative analysis of the genome content using gview [35] generated a pangenome profile of the l. monocytogenes isolates. the pangenome was constructed by iteratively appending unique regions onto an initial seed genome. genbank files for three […]

2016
PMCID: 5097402
PMID: 27814684
DOI: 10.1186/s12879-016-1980-6

[…] was performed using bayeshammer in the de novo assembly process using spades version 3.1.1 [4]. the quality of assemblies was assessed using quast [5] and comparison of total genome content using gview server [6]., whole genome assemblies were compared using parsnp to align both clinical isolates with two publically available lactobacillus animalis genomes, kctc 3501 and 381-il-28 (genbank […]

2015
PMCID: 4535895
PMID: 26484173
DOI: 10.1016/j.gdata.2015.01.006

[…] l/genbank under the accession number atbg00000000., the genome sequence of ht66 was aligned against other pseudomonas sequences from ncbi's database. blastatlases were generated using an online tool, gview server (https://server.gview.ca/). conserved and strain-specific genes were identified based on the homology (h) value (proteins with h values of less than 0.42 or more than 0.81 at e-value < […]

GView institution(s)
National Microbiology Laboratory – Public Health Agency of Canada, Winnipeg, MB, Canada; Department of Computer Science, University of Manitoba, Canada; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada
GView funding source(s)
Supported by Canada’s National Microbiology Laboratory.

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