Gviz specifications

Information


Unique identifier OMICS_17191
Name Gviz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.18.2
Stability Stable
Requirements methods, S4Vectors, IRanges, GenomicRanges, grid
Maintained Yes

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Documentation


Maintainer


  • person_outline Florian Hahne <>

Gviz article

Gviz citation

2018
PMCID: 5753478

[…] fdr < 0.05., ggplot2 (wickham, 2012) and ggrepel (https://cran.r-project.org/web/packages/ggrepel/index.html) r libraries were used for scatterplots. gene model diagrams were generated using the gviz package [39]. density plots were generated with the lsd package (https://cran.r-project.org/web/packages/lsd/index.html)., linear rna-seq reads were mapped to the c. elegans ce11 annotation […]

Gviz institution(s)
Novartis Institute for Biomedical Research, Basel, Switzerland; Department of Biomedicine, University of Basel, Basel, Switzerland.

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