gVolante statistics

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Citations per year

Number of citations per year for the bioinformatics software tool gVolante
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Tool usage distribution map

This map represents all the scientific publications referring to gVolante per scientific context
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Associated diseases

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gVolante specifications

Information


Unique identifier OMICS_19511
Name gVolante
Interface Web user interface
Restrictions to use None
Input data A sequence file.
Input format FASTA, GZ, TGZ, BZ2, TBZ, TAR, ZIP
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Shigehiro Kuraku

Publication for gVolante

gVolante citations

 (2)
library_books

Differential gene expression revealed with RNA Seq and parallel genotype selection of the ornithine decarboxylase gene in fish inhabiting polluted areas

2018
Sci Rep
PMCID: 5859300
PMID: 29556088
DOI: 10.1038/s41598-018-23182-z

[…] contigs, CD-HIT software (http://weizhong-lab.ucsd.edu/cd-hit/) was used with an identity cut-off threshold of 90%. “Bench-marking universal single-copy orthologs” (BUSCO) software (v2/v3) was run in gVolante to identify core genes, which is a set of single copy genes that are highly conserved among eukaryotes and thus expected to be present in a complete assembly. BUSCO analysis was performed usi […]

library_books

gVolante for standardizing completeness assessment of genome and transcriptome assemblies

2017
Bioinformatics
PMCID: 5870689
PMID: 29036533
DOI: 10.1093/bioinformatics/btx445

[…] gVolante is a web server designed to make the best use of the reference gene set CVG previously introduced for more accurate completeness assessment for vertebrates (). It achieves a method of handy a […]


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gVolante institution(s)
Phyloinformatics Unit, RIKEN Center for Life Science Technologies, Yokohama, Japan
gVolante funding source(s)
Supported by the RIKEN Center for Life Science Technologies.

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