gVolante statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Assembly evaluation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

gVolante specifications

Information


Unique identifier OMICS_19511
Name gVolante
Interface Web user interface
Restrictions to use None
Input data A sequence file.
Input format FASTA, GZ, TGZ, BZ2, TBZ, TAR, ZIP
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Shigehiro Kuraku <>

Publication for gVolante

gVolante in publications

 (2)
PMCID: 5859300
PMID: 29556088
DOI: 10.1038/s41598-018-23182-z

[…] cd-hit software (http://weizhong-lab.ucsd.edu/cd-hit/) was used with an identity cut-off threshold of 90%. “bench-marking universal single-copy orthologs” (busco) software (v2/v3) was run in gvolante to identify core genes, which is a set of single copy genes that are highly conserved among eukaryotes and thus expected to be present in a complete assembly. busco analysis was performed […]

PMCID: 5870689
PMID: 29036533
DOI: 10.1093/bioinformatics/btx445

[…] for this purpose, cegma and busco, do not have a user-friendly interface to serve as a uniform environment for assembly completeness assessment. , here, we introduce a brand-new web server, gvolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines cegma and busco and (ii) browsing pre-computed […]


To access a full list of publications, you will need to upgrade to our premium service.

gVolante institution(s)
Phyloinformatics Unit, RIKEN Center for Life Science Technologies, Yokohama, Japan
gVolante funding source(s)
Supported by the RIKEN Center for Life Science Technologies.

gVolante reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review gVolante