GWAlpha specifications

Unique identifier:
OMICS_14365
Interface:
Command line interface
Input data:
A sync file with 4 columns (reference contig, position in the reference contig, reference allele and allele frequencies for all population) and a pheno file with the design of the experiment (name of trait, standard deviation of the trait, minimum and maximum value for the trait, cutoff percentiles and corresponding trait value for the cutoff percentiles).
Programming languages:
Python, R, Shell (Bash)
Computer skills:
Advanced
Requirements:
Numpy, Scipy, parallel
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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GWAlpha distribution

download

GWAlpha support

Documentation

Maintainer

  • Alexandre Fournier-Level <>

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Credits

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Publications

Institution(s)

School of BioSciences and Centre for Systems Genomics, The University of Melbourne, Parkville, VIC, Australia; School of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia

Funding source(s)

This work was funded by a Human Frontier in Science Program fellowship.

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