GWAlpha specifications


Unique identifier OMICS_14365
Name GWAlpha
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A sync file with 4 columns (reference contig, position in the reference contig, reference allele and allele frequencies for all population) and a pheno file with the design of the experiment (name of trait, standard deviation of the trait, minimum and maximum value for the trait, cutoff percentiles and corresponding trait value for the cutoff percentiles).
Operating system Unix/Linux, Mac OS
Programming languages Python, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Numpy, Scipy, parallel
Maintained Yes



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  • person_outline Alexandre Fournier-Level <>

Publication for GWAlpha

GWAlpha institution(s)
School of BioSciences and Centre for Systems Genomics, The University of Melbourne, Parkville, VIC, Australia; School of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia
GWAlpha funding source(s)
This work was funded by a Human Frontier in Science Program fellowship.

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