GWAS analysis steps

Genome-wide association studies (GWASs) have been heralded as a major advance in biomedical discovery, having identified ~2,000 robust associations with complex diseases since 2005. Source text: Manolio, 2013.

Genome-wide association analysis software tools and databases

Most Recent Tools

Web app
Clinical Genome… Clinical Genome Resource Pathogenicity Calculator
FishBase FishBase

FishBase

An information system with key data on the biology of all fishes. FishBase is a…

An information system with key data on the biology of all fishes. FishBase is a global biodiversity information system on finfishes. Its initial goal to provide key facts on population dynamics for…

AmphibiaWeb AmphibiaWeb

AmphibiaWeb

A large-scale estimate of amphibian phylogeny, containing over 2800 species.…

A large-scale estimate of amphibian phylogeny, containing over 2800 species. This dataset provides strong support for many groups recognized in previous studies, but it also suggests non-monophyly…

Plant Trait Database Plant Trait Database

TRY Plant Trait Database

Provides dataset of the functional biodiversity of plants at the global scale…

Provides dataset of the functional biodiversity of plants at the global scale by assembling, harmonizing, and distributing published and unpublished data on functional plant traits as well as a wide…

Most Popular Tools

Desktop app
PLINK PLINK

PLINK

A free, open-source whole genome association analysis toolset, designed to…

A free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on…

Desktop app
Combined Annotation… Combined Annotation Dependent Depletion

CADD Combined Annotation Dependent Depletion

Scores the deleteriousness of single nucleotide variants as well as…

Scores the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome. CADD integrates many diverse annotations into a quantitative score. The basis of…

Web app
improved GSEA for GWAS improved GSEA for GWAS

i-GSEA4GWAS improved GSEA for GWAS

A web-based resource for analysis of GWAS data to identify pathways/gene sets…

A web-based resource for analysis of GWAS data to identify pathways/gene sets correlated to certain traits by implementing an improved Gene Set Enrichment Analysis (i-GSEA) approach. i-GSEA4GWAS aims…

Web app
Pathway and Network… Deprecated Pathway and Network Oriented GWAS Analysis

PANOGA Pathway and Network Oriented GWAS Analysis

A web server for post-genome-wide associatio analysis. PANOGA supports pathway…

A web server for post-genome-wide associatio analysis. PANOGA supports pathway and network-oriented SNP–phenotype association analysis in a single system without requiring any additional manual…

Curators for GWAS analysis

  • Seraya Maouche's avatar image Seraya Maouche's country flag
    Seraya Maouche
    TBi Scientific, Paris, France
  • Shannon Joslin's avatar image Shannon Joslin's country flag
    Shannon Joslin
    University of California, Davis
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