GWAS analysis steps

Genome-wide association studies (GWASs) have been heralded as a major advance in biomedical discovery, having identified ~2,000 robust associations with complex diseases since 2005. Source text: Manolio, 2013.

Genome-wide association analysis software tools and databases

Most Recent Tools

ASGSCA
Desktop

ASGSCA

Provides tools to model and test the association between multiple genotypes and…

Provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. ASGSCA is an Association Studies for multiple…

Bacon
Desktop

Bacon

Maximizes power while properly controlling the false positive rate. Bacon is…

Maximizes power while properly controlling the false positive rate. Bacon is based on the estimation of the empirical null distribution using Bayesian statistics. The utility of the tool was…

P2BAT
Desktop

P2BAT

Provides a massive parallel and user friendly implementation of the…

Provides a massive parallel and user friendly implementation of the PBAT-analysis tools for family based association tests (FBATs) in large-scale studies, including genome-wide association studies…

AssociationView…
Desktop

AssociationViewer

Allows visualization of large-scale genetic and genomic data exemplified by…

Allows visualization of large-scale genetic and genomic data exemplified by results from genome-wide association studies (GWAS). AssociationViewer provides an integrated framework to facilitate the…

Most Popular Tools

PLINK
Desktop

PLINK

A free, open-source whole genome association analysis toolset, designed to…

A free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on…

CADD
Desktop

CADD Combined Annotation Dependent Depletion

Scores the deleteriousness of single nucleotide variants as well as…

Scores the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome. CADD integrates many diverse annotations into a quantitative score. The basis of…

i-GSEA4GWAS
Web

i-GSEA4GWAS improved GSEA for GWAS

A web-based resource for analysis of GWAS data to identify pathways/gene sets…

A web-based resource for analysis of GWAS data to identify pathways/gene sets correlated to certain traits by implementing an improved Gene Set Enrichment Analysis (i-GSEA) approach. i-GSEA4GWAS aims…

PANOGA
Web

PANOGA Pathway and Network Oriented GWAS Analysis

A web server for post-genome-wide associatio analysis. PANOGA supports pathway…

A web server for post-genome-wide associatio analysis. PANOGA supports pathway and network-oriented SNP–phenotype association analysis in a single system without requiring any additional manual…

Curators for GWAS analysis

  • Seraya Maouche's avatar image Seraya Maouche's country flag
    Seraya Maouche
    TBi Scientific, Paris, France
  • Shannon Joslin's avatar image Shannon Joslin's country flag
    Shannon Joslin
    University of California, Davis
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