GWAS Central statistics

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Protocols

GWAS Central specifications

Information


Unique identifier OMICS_07297
Name GWAS Central
Alternative name HGVbaseG2P
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/GWAS_Central

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Anthony J. Brookes

Additional information


http://help.gwascentral.org/

Publications for GWAS Central

GWAS Central citations

 (13)
library_books

The SNPcurator: literature mining of enriched SNP disease associations

2018
PMCID: 5844215
PMID: 29688369
DOI: 10.1093/database/bay020

[…] rds a certain disease and can affect their responses to drugs and medications (). Currently, information on SNPs is available in databases such as the genome-wide association study (GWAS) Catalog (), Gwas Central (), GWASdb (), mirsSNP (), GRASP (). These resources are constructed and curated manually; however, and the richness of information specifically related to the clinical impact of SNPs is […]

call_split

Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population

2017
Mol Genet Genomics
PMCID: 5854719
PMID: 29124443
DOI: 10.1007/s00438-017-1394-1
call_split See protocol

[…] sorders reported in previous studies were investigated using DisGeNET [http://www.disgenet.org/web/DisGeNET/, (Piñero et al. )], GWAS Catalogue [https://www.ebi.ac.uk/gwas/, (MacArthur et al. )], and GWAS Central [http://www.gwascentral.org/, (Beck et al. )] databases. […]

library_books

Low LDL cholesterol, PCSK9 and HMGCR genetic variation, and risk of Alzheimer’s disease and Parkinson’s disease: Mendelian randomisation study

2017
PMCID: 5421439
PMID: 28438747
DOI: 10.1136/bmj.j1648

[…] Global Lipid Genetics Consortium and variants with missing values. We then pruned the variants manually for pleiotropy excluding variants with reported associations with confounding phenotypes using GWAS Central (www.gwascentral.org/); and for linkage disequilibrium using the SNP Annotation and Proxy search (SNAP, www.broadinstitute.org/mpg/snap/), excluding variants in linkage disequilibrium wit […]

library_books

A data driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis

2017
PMCID: 5353945
PMID: 28302159
DOI: 10.1186/s40478-017-0424-x

[…] frequency and genotyping pruning. Association with ALS was determined by Chi2-test; threshold for significance was set at an unadjusted p-value of 5E-08 [].Alzheimer’s GWA genes were identified using GWAS Central (http://www.gwascentral.org), which is a compilation of summary level findings from genetic association studies. 57 studies were identified containing the keyword ‘Alzheimer’s’. Variants […]

library_books

Cis acting single nucleotide polymorphisms alter MicroRNA mediated regulation of human brain expressed transcripts

2016
Hum Mol Genet
PMCID: 5418741
PMID: 28171541
DOI: 10.1093/hmg/ddw317

[…] of the 17 genes that showed altSNP-induced changes in miRNA-mediated regulation, 5 had GWAS associated hits. These include rs3739497 (RAPGEF1, associated with glycemic traits and epilepsy prognosis, GWAS Central Identifier: HGVM2257467), rs8113500 (TUBB4A, associated with Parkinson’s disease and age-related macular degeneration, HGVM8374170), rs8682 (RAB5A, associated with Parkinson’s disease, st […]

library_books

The Drosophila ETV5 Homologue Ets96B: Molecular Link between Obesity and Bipolar Disorder

2016
PLoS Genet
PMCID: 4900636
PMID: 27280443
DOI: 10.1371/journal.pgen.1006104

[…] s1516725, rs1516726, rs4234589, rs4686728, rs4686730, rs6777779, rs6809651, rs7433760, rs9824882, rs7647305 and rs9816226. P-values of association with BMI and/or bipolar disorder were retrieved from GWAS central []. Pairwise linkage disequilibrium (LD) between the SNPs were retrieved from SNAP proxy [], using “1000 Genome Pilot 1” as the SNP data set, and CEU as the population panel. was generat […]

Citations

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GWAS Central institution(s)
Department of Genetics, University of Leicester, Leicester, UK
GWAS Central funding source(s)
Supported by the European Community’s Seventh Framework Programme (FP7/2007-2013) under grant agreement 200754, GEN2PHEN.

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