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Genetic association databases | Genome-wide association analysis

Genome-wide association studies (GWASs) have identified numerous single nucleotide polymorphisms (SNPs) that are associated with development of multifactorial diseases, such as coronary artery disease, rheumatoid arthritis, type 2 diabetes mellitus…
dbGaP
Dataset

dbGaP database of Genotypes and Phenotypes

Enables investigators to have rapid access to a collection of genotypes and…

Enables investigators to have rapid access to a collection of genotypes and phenotypes data, providing a rich resource of both individual-level and summary-level information for their exploration.…

GAD
Dataset

GAD Genetic Association Database

Intends to collect, standardize and archive genetic association study data. GAD…

Intends to collect, standardize and archive genetic association study data. GAD is a public repository of published genetic association studies that contains molecular, clinical and study parameters…

PheWAS catalog
Dataset

PheWAS catalog

Contains the PheWAS results for 3,144 single-nucleotide polymorphisms (SNPs)…

Contains the PheWAS results for 3,144 single-nucleotide polymorphisms (SNPs) present in the NHGRI GWAS Catalog as of 4/17/2012 in 13,835 European-ancestry individuals from five sites of the…

HuGE Navigator
Dataset

HuGE Navigator

Provides access to a continuously updated knowledge base in human genome…

Provides access to a continuously updated knowledge base in human genome epidemiology, including information on population prevalence of genetic variants, gene-disease associations, gene-gene and…

VarySysDB
Dataset

VarySysDB

Offers information encompassing published genetic polymorphisms. VarySysDB is a…

Offers information encompassing published genetic polymorphisms. VarySysDB is a database that provides separately annotated genetic polymorphisms for each H-inv transcripts (HITs), even from multiple…

NCBI MedGen
Dataset

NCBI MedGen

Organizes information related to human medical genetics, such as attributes of…

Organizes information related to human medical genetics, such as attributes of conditions with a genetic contribution. The core content of the record may include names, identifiers used by other…

Monarch…
Dataset

Monarch Initiative

Provides tools for genotype-phenotype analysis, genomic diagnostics, and…

Provides tools for genotype-phenotype analysis, genomic diagnostics, and precision medicine across broad areas of disease. Monarch tools leverage this conceptual framework to help users understand…

Panzea
Dataset

Panzea

The public web site of the Molecular and Functional Diversity in the Maize…

The public web site of the Molecular and Functional Diversity in the Maize Genome project. Panzea provides access to the genotype, phenotype and polymorphism data produced by the project through…

PharmGKB
Dataset

PharmGKB

A comprehensive resource that curates knowledge about the impact of genetic…

A comprehensive resource that curates knowledge about the impact of genetic variation on drug response for clinicians and researchers. PharmGKB has refocused on curating knowledge rather than housing…

dbGaP Data Browser
Dataset

dbGaP Data Browser database of Genotypes and Phenotypes Data Browser

A resource that enables view-only access to the database of Genotypes and…

A resource that enables view-only access to the database of Genotypes and Phenotypes (dbGaP). dbGaP Data Browser was developed in response to requests from the scientific community for a resource…

GWAS Catalog
Dataset

GWAS Catalog genome-wide association studies Catalog

Gathers a manually curated resource of all published Genome-Wide Association…

Gathers a manually curated resource of all published Genome-Wide Association Studies (GWAS) and association results. GWAS Catalog provides a dedicated mapping spreadsheet between all reported GWAS…

GWASdb
Dataset

GWASdb

A one stop shop which combines collections of traits/diseases associated SNP…

A one stop shop which combines collections of traits/diseases associated SNP (TASs) from current GWAS and their comprehensive functional annotations, as well as disease classifications. GWASdb helps…

PhenoScanner
Dataset

PhenoScanner

Extracts and aligns associations for user-specified variants and proxies across…

Extracts and aligns associations for user-specified variants and proxies across a large curated database. PhenoScanner extends current catalogues of genetic data by including all available results as…

DANCE
Web

DANCE Disease-ANCEstry Networks

A graph-based web tool that allows to integrate and visualize information on…

A graph-based web tool that allows to integrate and visualize information on human complex phenotypes and their GWAS-hits, as well as their risk allele frequencies in different populations. DANCE…

LincSNP
Dataset

LincSNP

An integrated database, to identify and annotate disease-associated SNPs in…

An integrated database, to identify and annotate disease-associated SNPs in human lincRNAs. The current release of LincSNP contains approximately 140,000 disease-associated SNPs (or linkage…

LD Hub
Desktop
Web

LD Hub Linkage Disequilibrium Hub

Automates the linkage disequilibrium score regression analysis pipeline. LD Hub…

Automates the linkage disequilibrium score regression analysis pipeline. LD Hub calculates the single nucleotide polymorphims (SNP) heritability for the uploaded phenotype(s), and a genetic…

MelGene
Dataset

MelGene

Provides a comprehensive, regularly updated, collection of data from genetic…

Provides a comprehensive, regularly updated, collection of data from genetic association studies in cutaneous melanoma (CM), including random-effects meta-analysis results of all eligible…

VaDE
Dataset

VaDE VarySysDB Disease Edition

A literature based genetic trait and genomic information database. VaDE…

A literature based genetic trait and genomic information database. VaDE provides genomic polymorphisms associated to diseases, traits, and pharmacogenomics. SNP-trait association data were obtained…

GRASP
Dataset

GRASP Genome-Wide Repository of Associations between SNPs and Phenotypes

A deeply extracted and annotated database of genome-wide association studies…

A deeply extracted and annotated database of genome-wide association studies (GWAS) results. GRASP v2.0 contains ∼8.87 million SNP associations reported in 2082 studies, an increase of ∼2.59…

MEGA-V
Desktop

MEGA-V Mutation Enrichment Gene set Analysis of Variants

Provides a statistical framework to test associations between any type of…

Provides a statistical framework to test associations between any type of perturbation of biological processes and the occurrence of disease. MEGA-V identifies gene sets with a significantly higher…

GWAS Central
Dataset

GWAS Central

Provides access to a collection of summary-level genetic association data. GWAS…

Provides access to a collection of summary-level genetic association data. GWAS Central collates association data and study metadata from many disparate sources whose data are available in different…

e-GRASP
Dataset

e-GRASP

Enables the query and exploration of the information contained in the GRASP2…

Enables the query and exploration of the information contained in the GRASP2 database alongside evolutionary information which we have added for each single nucleotide polymorphism (SNP). This…

PhenoDigm
Dataset

PhenoDigm PHENOtype comparisons for DIsease and Gene Models

An automated method to provide evidence about gene-disease associations by…

An automated method to provide evidence about gene-disease associations by analysing phenotype information. PhenoDigm integrates data from a variety of model organisms and, at the same time, uses…

The Implicitome
Desktop

The Implicitome

A resource for rationalizing gene-disease associations. The implicitome can be…

A resource for rationalizing gene-disease associations. The implicitome can be used in conjunction with experimental data resources to rationalize both known and novel associations. We demonstrate…

Infevers
Dataset

Infevers

Provides clinicians and geneticists a resource for the interpretation of the…

Provides clinicians and geneticists a resource for the interpretation of the results coming from the genetic analysis. Infevers is a registry of all the variants identified in association with…

AraGWAS
Dataset

AraGWAS

Provides genome-wide association studies (GWAS) results. AraGWAS is a central…

Provides genome-wide association studies (GWAS) results. AraGWAS is a central resource for all genetic associations found through GWAS in A. thaliana. It reports respective a comprehensible way and…

H2P2
Dataset

H2P2 Hi-HOST Phenome Project

Gathers information about cellular and infections agents. H2P2 is an online…

Gathers information about cellular and infections agents. H2P2 is an online repository containing a lot of data about genome-wide association study (GWAS) cellular. This database assists users in…

GeneAtlas
Dataset

GeneAtlas

Assists researchers to query UK Biobank results in an easy way without the need…

Assists researchers to query UK Biobank results in an easy way without the need to incur in high computational costs. GeneAtlas contains significant and non-significant associations. It provides an…

GWAB
Web

GWAB Genome-Wide Association Boosting

Serves to the network-based boosting of human GWAS (genome-wide association…

Serves to the network-based boosting of human GWAS (genome-wide association studies) data. GWAB is a web server which reprioritizes candidate disease genes by integrating the GWAS and network data.…

SNPxGE(2)
Dataset

SNPxGE(2)

Furnishes information about known single nucleotide polymorphisms…

Furnishes information about known single nucleotide polymorphisms (SNP)–coexpression associations. SNPxGE(2) synthesizes results from of a large study including 269 individuals from 4 human…

DistiLD Database
Dataset

DistiLD Database DistiLinkage Disequilibrium Database

Increases the usage of existing genome-wide association study (GWAS) results.…

Increases the usage of existing genome-wide association study (GWAS) results. DistiLD database performs three important tasks: (i) published GWAS are collected from several sources and linked to…

MR-Base
Dataset

MR-Base Mendelian Randomization base

Provides a complete summary database from 1094 genome-wide association studies…

Provides a complete summary database from 1094 genome-wide association studies (GWAS) on diseases and other complex traits. MR-Base is a platform using data to perform Mendelian randomization (MR)…

GEPdb
Dataset

GEPdb

Integrates both genome-wide association studies and expression quantitative…

Integrates both genome-wide association studies and expression quantitative trait loci information, the two primary sources of genome-wide mapping for genotype-phenotype and genotype-expression…

NCBI PheGenI
Dataset

NCBI PheGenI Phenotype-Genotype Integrator

Merges NHGRI genome-wide association study (GWAS) catalog data with several…

Merges NHGRI genome-wide association study (GWAS) catalog data with several databases housed at the National Center for Biotechnology Information (NCBI), including Gene, dbGaP, OMIM, GTEx and dbSNP.…

FishBase
Dataset

FishBase

An information system with key data on the biology of all fishes. FishBase is a…

An information system with key data on the biology of all fishes. FishBase is a global biodiversity information system on finfishes. Its initial goal to provide key facts on population dynamics for…

SIDD
Dataset

SIDD Semantically Integrated Disease-associated Database

Integrates 18 disease-associated databases, for researchers to browse multiple…

Integrates 18 disease-associated databases, for researchers to browse multiple types of disease-related molecular, phenotypic and environmental features (DR-MPEs) in a view. A web interface allows…

GWAS DB
Dataset

GWAS DB Genome Wide Association Database

Gives information about genome wide association (GWAS). GWAS DB is an online…

Gives information about genome wide association (GWAS). GWAS DB is an online resource that provides: (1) graphic viewer to search disease related SNP candidates; (2) frequency data such as genotype…

Genopedia
Dataset

Genopedia

Provides a gene-centered summary view of genetic association studies. The…

Provides a gene-centered summary view of genetic association studies. The system of Genopedia translates a gene name, gene symbol, gene alias or protein name entered by users. It displays information…

Phenopedia
Dataset

Phenopedia

Provides researchers access to updated information on human genetic association…

Provides researchers access to updated information on human genetic association studies in order to facilitate knowledge synthesis. The information about genes studied in relation to a particular…

Type2 Diabetes…
Dataset

Type2 Diabetes Knowledge Portal

Offers creating analytic tools to analyze medical data. T2D Knowledge Portal is…

Offers creating analytic tools to analyze medical data. T2D Knowledge Portal is a database of DNA sequence, functional and epigenomic information, and clinical data from studies on type 2 diabetes…

AmphibiaWeb
Dataset

AmphibiaWeb

Enables to search and retrieve information relating to amphibian biology and…

Enables to search and retrieve information relating to amphibian biology and conservation. AmphibiaWeb provides a large-scale estimate of amphibian phylogeny, containing over 2800 species. The…

TRY
Dataset

TRY Plant Trait Database

Provides dataset of the functional biodiversity of plants at the global scale…

Provides dataset of the functional biodiversity of plants at the global scale by assembling, harmonizing, and distributing published and unpublished data on functional plant traits as well as a wide…

AtPID
Dataset

AtPID Arabidopsis thaliana Protein Interactome Database

Depicts and integrates the information pertaining to protein-protein…

Depicts and integrates the information pertaining to protein-protein interaction networks, domain architecture, ortholog information and GO annotation in the Arabidopsis thaliana proteome. AtPID…

Knowledge.bio
Dataset

Knowledge.bio

An online tool to explore established and potential gene-disease associations…

An online tool to explore established and potential gene-disease associations in the context of other biomedical relations. Knowledge.bio provides access to a network of interconnected concepts mined…

the CEREALAB database
Dataset

the CEREALAB database Cereals genotypic phenotypic source

Combines data obtained by genotyping activity of the CEREALAB research group…

Combines data obtained by genotyping activity of the CEREALAB research group with the already available molecular, genotypic and phenotypic data. The CEREALAB database intends to help the breeders in…

Cancer GAMAdb
Dataset

Cancer GAMAdb Genome-wide Association and Meta Analyses database

Contains key descriptive characteristics of each genetic association extracted…

Contains key descriptive characteristics of each genetic association extracted from published genome-wide association studies (GWAS) and meta-analyses relevant to cancer risk. Cancer GAMAdb is a…

PhenoPPIOrth
Dataset

PhenoPPIOrth

A tool based on a computational algorithm that uses orthology and…

A tool based on a computational algorithm that uses orthology and protein-protein interaction information to infer gene-phenotype associations for multiple species. PhenoPPIOrth is a web server that…

PhenDisco
Web

PhenDisco Phenotype Discoverer

Allows users to retrieve data from the database of genotypes and phenotypes…

Allows users to retrieve data from the database of genotypes and phenotypes (dbGaP). PhenDisco is a web-based information retrieval system that consists of two main components: (1) text processing…

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