Protocols

GWAS.PC specifications

Information


Unique identifier OMICS_24891
Name GWAS.PC
Alternative name GWAS Power Calculation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Additional information


http://genocanyon.med.yale.edu/Software_Zhaocenter/GWASPC/example.html

Publication for GWAS Power Calculation

GWAS.PC citation

call_split

ITGB5 and AGFG1 variants are associated with severity of airway responsiveness

2013
BMC Med Genet
PMCID: 3765944
PMID: 23984888
DOI: 10.1186/1471-2350-14-86
call_split See protocol

[…] sate for the 4 times greater duration of administration of stimulus. Slope values were log-transformed so that they would follow a normal distribution. To compare DAG subjects to those of the primary GWAS, PC20 was calculated in 600 of the 650 subjects that had a 20% or greater drop in FEV1 at the highest provocation dose. Genotyping was performed using the Hapmap 317 K platform or Illumina 370 Du […]

GWAS.PC institution(s)
Clinical Epidemiology Research Center (CERC), Veterans Affairs (VA) Cooperative Studies Program, VA Connecticut Healthcare System, West Haven, CT, USA; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT, USA; Center for Medical Informatics, Yale University School of Medicine, New Haven, CT, USA; Massachusetts Area Veterans Epidemiology Research and Information Center (MAVERIC), VA Cooperative Studies Program, VA Boston Healthcare System, Boston, MA, USA; Department of Medicine, Harvard University School of Medicine, Boston, MA, USA; Department of Medicine, Yale University School of Medicine, New Haven, CT, USA; Bruce W. Carter Miami Veterans Affairs (VA) Medical Center, Miami, FL, USA; Department of Psychiatry, University of Miami Miller School of Medicine, Miami, FL, USA
GWAS.PC funding source(s)
Supported by the VA Office of Research and Development (Cooperative Studies Program #572 and Million Veteran Program #G002).

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