GWAVA pipeline

GWAVA specifications

Information


Unique identifier OMICS_08572
Name GWAVA
Alternative name Genome Wide Annotation of VAriants
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


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Maintainer


  • person_outline Paul Flicek <>

Information


Unique identifier OMICS_08572
Name GWAVA
Alternative name Genome Wide Annotation of VAriants
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Paul Flicek <>

Publication for Genome Wide Annotation of VAriants

GWAVA IN pipelines

 (2)
2016
PMCID: 4766752
PMID: 26911590
DOI: 10.1186/s12864-016-2481-0

[…] hypersensitivity sites and expression quantitative trait locus (eqtl) associations was performed using haploreg v4.0 [38] and genomic evolutionary rate profiling (gerp) scores were obtained using gwava (genome wide annotation of variants) [39]. variants of interest were also queried using the human osteoblast eqtl dataset generated by grundberg et al. [40]., descriptive statistics for the two […]

2016
PMCID: 4766752
PMID: 26911590
DOI: 10.1186/s12864-016-2481-0

[…] sites and expression quantitative trait locus (eqtl) associations was performed using haploreg v4.0 [38] and genomic evolutionary rate profiling (gerp) scores were obtained using gwava (genome wide annotation of variants) [39]. variants of interest were also queried using the human osteoblast eqtl dataset generated by grundberg et al. [40]., descriptive statistics for the two […]

GWAVA institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, UK and Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK

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