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|Alternative name||Genome Wide Information on Protein Synthesis visualized|
|Restrictions to use||None|
|Data access||File download, Browse|
|User data submission||Not allowed|
- Bacillus subtilis
- Escherichia coli
- Staphylococcus aureus
- Caenorhabditis elegans
- Drosophila melanogaster
- Plasmodium falciparum
- Trypanosoma brucei
Plants and Fungi
- Arabidopsis thaliana
- Saccharomyces cerevisiae
- Zea mays
- Homo sapiens
- Mus musculus
- Rattus norvegicus
- Danio rerio
- Xenopus laevis
- Forum: http://gwips.ucc.ie/Forum/
- person_outline Pavel Baranov
Publications for Genome Wide Information on Protein Synthesis visualized
RNA editing by ADAR1 leads to context dependent transcriptome wide changes in RNA secondary structure
[…] NormalizedreadcountKD∕Normalizedreadcountcontrol 4TE = NormalizedreadcountRibo-seq∕NormalizedreadcountRNA - seq 5TER = TEKD∕TEcontrol= FCRibo-seq∕FCRNA-seq Ribosome occupancy was calculated using the GWIPS-viz method in Ribogalaxy Meta-gene analysis was done in the span of 150 bases upstream/downstream to translation start/stop sites. […]
riboviz: analysis and visualization of ribosome profiling datasets
[…] es such as biased codon usage, presence of poly-basic amino-acids, and protein-domain architecture affect the distribution of footprinting reads along a transcript . Recently, several tools such as GWIPS-viz , RiboGalaxy , and RPFdb  have been developed for both analysis and visualization of ribosome-profiling datasets. While GWIPS-viz and RPFdb use unified pipelines for processing and map […]
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
[…] xt of a whole organism (,) and for the detection of translation quantitative trait loci (,). Ribosome Profiling is now further empowered by a wide spectrum of computational resources. At RiboSeq.Org, GWIPS-viz (,) provides visualizations of genomic alignments for publicly available RiboSeq data aligned to the genomes of a dozen of organisms and RiboGalaxy () allows researchers to analyse their dat […]
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This is a web tool to visualize ribosome profiling data. Its contains tens of RP studies in 24 organisms, including model organisms like mouse, worm, yeast and of course Human.
I finds this web tool very useful.
You can enter a location on the DNA or query gene and get out pot of the RP reads in this area.