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Protocols

GXD specifications

Information


Unique identifier OMICS_03320
Name GXD
Alternative name Gene eXpression Database
Restrictions to use Academic or non-commercial use
Database management system MySQL
Community driven Yes
Data access File download, Browse
User data submission Allowed
Version 6.07
Maintained Yes

Taxon


  • Rodents
    • Mus musculus

Documentation


Maintainer


  • person_outline Martin Ringwald

Publications for Gene eXpression Database

GXD citations

 (76)
library_books

Comparative genomic and transcriptomic analyses of Family 1 UDP glycosyltransferase in three Brassica species and Arabidopsis indicates stress responsive regulation

2018
Sci Rep
PMCID: 5789830
PMID: 29382843
DOI: 10.1038/s41598-018-19535-3

[…] atabase (http://brassicadb.org/brad/) and the Bolbase database (http://ocri-genomics.org/bolbase) were used for gene syntenic analysis. Expression Array and RNA Sequencing data were obtained from the Gene Expression database with the following accession numbers: GSE43245 in B. rapa for expression in tissues, GSE74044 for the clubroot disease, GSE51363 for expression against Methyl JA in B. napus. […]

library_books

Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross reactivity against naturally expressed proteins in human tissues

2017
BMC Cancer
PMCID: 5745885
PMID: 29282079
DOI: 10.1186/s12885-017-3854-8

[…] The previous version 1.0 of Expitope [] assessed the expression of human antigens based on one combined gene expression database [] and the Illumina Body Map database []. Interestingly, HLA-typing of samples from the Illumina Body Map and Wang et al. [] showed that the tissues used for expression analys […]

call_split

Novel KIAA0753 mutations extend the phenotype of skeletal ciliopathies

2017
Sci Rep
PMCID: 5686170
PMID: 29138412
DOI: 10.1038/s41598-017-15442-1
call_split See protocol

[…] The URLs for data presented herein are as follows:Human Gene Mutation Database (HGMD) www.hgmd.org/ Reference Sequence database (RefSeq) www.ncbi.nlm.nih.gov/refseq/ MGI Gene Expression Database www.informatics.jax.org/expression.shtml/ Basic Local Alignment Search Tool (BLAST) http://blast.ncbi.nlm.nih.gov/Blast.cgi/ NHLBI Exome Sequencing Project (ESP) http://evs.gs […]

library_books

G protein‐coupled receptor 37‐like 1 modulates astrocyte glutamate transporters and neuronal NMDA receptors and is neuroprotective in ischemia

2017
Glia
PMCID: 5724489
PMID: 28795439
DOI: 10.1002/glia.23198

[…] such glial‐restricted receptor, the G protein‐coupled receptor GPR37‐like 1 (GPR37L1).We identified GPR37L1 as a potential astrocyte‐specific receptor during a visual screen of the Allen Brain Atlas gene expression database (N.P.P. unpublished). GPR37L1 belongs to the Class A rhodopsin‐like receptor subfamily of GPCRs. The Gpr37l1 coding sequence was first identified by sequence similarity to the […]

call_split

Cellular Response to Ciprofloxacin in Low Level Quinolone Resistant Escherichia coli

2017
Front Microbiol
PMCID: 5516121
PMID: 28769919
DOI: 10.3389/fmicb.2017.01370
call_split See protocol

[…] Gene functions (COG, Clusters of Orthologous Groups) () were identified using the following bioinformatics resources for E. coli: ECOCYC, ECOGENE, Gene Expression Database, KEGG, BPROM, and DAVID. Venn diagrams were created using the http://bioinfogp.cnb.csic.es/tools/venny/index.html website. […]

library_books

In Silico Model driven Assessment of the Effects of Brain derived Neurotrophic Factor Deficiency on Glutamate and Gamma Aminobutyric Acid: Implications for Understanding Schizophrenia Pathophysiology

2017
PMCID: 5426484
PMID: 28449558
DOI: 10.9758/cpn.2017.15.2.115

[…] initial concentration of BDNF and recording the perturbed effect on the system. Four concentration levels were considered, which were 100%, 75%, 50% and 10% of initial concentration defined based on gene expression database BioGPS.Sensitivity analysis was carried out by setting the task as time course with the ‘effect’ as non-constant concentrations of species and the ‘cause’ as initial concentra […]

Citations

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GXD institution(s)
The Jackson Laboratory, Bar Harbor, ME, USA
GXD funding source(s)
Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) of the National Institutes of Health (NIH) (HD062499).

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