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A research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). GyDB is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives.

Restrictions to use:
None
Version:
GyDB version 2.0
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Institution(s)

Biotech Vana, Valencia; Institut Cavanilles de Biodiversitat i Biología Evolutiva Universitat de València, Spain; HIV Monitoring Foundation, Amsterdam, The Netherlands; CIBER de Epidemiología y Salud Pública (CIBERESP), Spain

  • (Llorens et al., 2011) The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic acids research.
    PMID: 21036865
  • (Llorens et al., 2008) The Gypsy Database (GyDB) of mobile genetic elements. Nucleic acids research.
    PMID: 17895280
  • Viruses
  • (Bergman and Quesneville, 2007) Discovering and detecting transposable elements in genome sequences. Briefings in bioinformatics.
    PMID: 17932080
  • (Anisimova et al., 2015) Statistical approaches to detecting and analyzing tandem repeats in genomic sequences. Frontiers in bioengineering and biotechnology.
    PMID: 25853125
  • (Saha et al., 2008) Empirical comparison of ab initio repeat finding programs. Nucleic acids research.
    PMID: 18287116
  • (Lerat, 2010) Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity.
    PMID: 19935826
  • (Janicki et al., 2011) Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome research.
    PMID: 21850457

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