H-DBAS statistics

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Protocols

H-DBAS specifications

Information


Unique identifier OMICS_01887
Name H-DBAS
Alternative name Human-transcriptome DataBase for Alternative Splicing
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 6
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Human-transcriptome_database_for_alternative_splicing

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Tadashi Imanishi

Publications for Human-transcriptome DataBase for Alternative Splicing

H-DBAS citations

 (10)
call_split

Interleukin 35 Polymorphisms Are Associated with Decreased Risk of Premature Coronary Artery Disease, Metabolic Parameters, and IL 35 Levels: The Genetics of Atherosclerotic Disease (GEA) Study

2017
PMCID: 5340958
PMID: 28321150
DOI: 10.1155/2017/6012795
call_split See protocol

[…] predict the potential effect of the IL-12A and EBI3 polymorphisms, we used the following bioinformatics tools: FastSNP [], SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpinfo/snpfunc.html), Human-transcriptome Database for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), Splice Port: An Interactive Splice Site Analysis Tool (http://spliceport.cbcb.umd.edu/SplicingAnalyser.htm […]

call_split

The rs7044343 Polymorphism of the Interleukin 33 Gene Is Associated with Decreased Risk of Developing Premature Coronary Artery Disease and Central Obesity, and Could Be Involved in Regulating the Production of IL 33

2017
PLoS One
PMCID: 5207498
PMID: 28045954
DOI: 10.1371/journal.pone.0168828
call_split See protocol

[…] The effect of the IL-33 SNPs was predicted using the following bioinformatics software: FastSNP [], SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpfunc.htm), Human-transcriptome Database for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), Splice Port: An Interactive Splice Site Analysis Tool (http://www.spliceport.cs.umd.edu/SplicingAnalyser2. […]

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Interleukin 17A Gene Haplotypes Are Associated with Risk of Premature Coronary Artery Disease in Mexican Patients from the Genetics of Atherosclerotic Disease (GEA) Study

2015
PLoS One
PMCID: 4304820
PMID: 25615631
DOI: 10.1371/journal.pone.0114943
call_split See protocol

[…] We predicted the potential effect of the IL-17A SNPs using bioinformatics tools, including FastSNP [], SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpfunc.htm), Human-transcriptome Database for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), Splice Port: An Interactive Splice Site Analysis Tool (http://www.spliceport.cs.umd.edu/SplicingAnalyser2. […]

library_books

Novel Transcription Factor Variants through RNA Sequencing: The Importance of Being “Alternative”

2015
Int J Mol Sci
PMCID: 4307332
PMID: 25590302
DOI: 10.3390/ijms16011755

[…] f transcript-specific expression profiles in cells/tissues and computational challenges. To partially fill the gap in AS knowledge, different web resources have been developed, such as ProSplicer [], H-DBAS [], whereas others have been recently dismissed or are currently not updated. In this regard, we recently developed an HSA21-centric database, ALE-HSA21, to provide transcript-based information […]

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Single Nucleotide Polymorphisms within LIPA (Lysosomal Acid Lipase A) Gene Are Associated with Susceptibility to Premature Coronary Artery Disease. A Replication in the Genetic of Atherosclerotic Disease (GEA) Mexican Study

2013
PLoS One
PMCID: 3775807
PMID: 24069331
DOI: 10.1371/journal.pone.0074703
call_split See protocol

[…] the potential effect of LIPA SNPs associated with premature CAD in our population using bioinformatics tools, including FastSNP [], SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpfunc.htm), Human-transcriptome Database for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), SplicePort (http://www.spliceport.cs.umd.edu/SplicingAnalyser2.html), ESE finder(http://rulai.cshl.edu/cgi […]

call_split

Single Nucleotide Polymorphisms of the Angiotensin Converting Enzyme (ACE) Gene Are Associated with Essential Hypertension and Increased ACE Enzyme Levels in Mexican Individuals

2013
PLoS One
PMCID: 3669228
PMID: 23741507
DOI: 10.1371/journal.pone.0065700
call_split See protocol

[…] tial effect of the ACE polymorphisms associated with hypertension in our population using bioinformatics Tools, including FastSNP , SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpfunc.htm), Human-transcriptome DataBase for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), SplicePort (http://www.spliceport.cs.umd.edu/SplicingAnalyser2.html), ESE finder (http://rulai.cshl.edu/cg […]

Citations

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H-DBAS institution(s)
Integrated Database and Systems Biology Team, Biomedicinal Information Research Center National Institute of Advanced Industrial Science and Technology, AIST Bio-IT Research Bldg., Tokyo, Japan; Department of Medical Genome Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, Japan; Center for Information Biology and DDBJ, National Institute of Genetics, Shizuoka, Japan
H-DBAS funding source(s)
Supported by Integrated database project of the Ministry of Economy, Trade, and Industry of Japan, Ministry of Education, Culture, Sports, Science and Technology of Japan, National Institute of Advanced Industrial Science and Technology (AIST) and Japan Biological Informatics Consortium (JBIC).

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