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h5vc | Scalable nucleotide tallies with HDF5

A package that contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. h5vc contains functionality for creating tallies from BAM files, flexible and scalable data visualization, data quality assessment, computing statistics relevant to variant calling and other applications. Tallies stored in HDF5 files are a feasible and useful extension of the tool set of genome analysts. A concrete implementation of the tools necessary to make use of this data format is provided by the package h5vc.

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h5vc forum

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h5vc classification

h5vc specifications

Unique identifier:
OMICS_02243
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

h5vc distribution

versioning

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No versioning.

h5vc support

Documentation

Credits

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Publications

Institution(s)

EMBL Heidelberg, Genome Biology Unit, Heidelberg, Germany

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